| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Meso_3472 |
|---|
| Symbol | trmE |
|---|
| ID | 4179880 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chelativorans sp. BNC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008254 |
|---|
| Strand | - |
|---|
| Start bp | 3748488 |
|---|
| End bp | 3749816 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 638069367 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | YP_676008 |
|---|
| Protein GI | 110635800 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCGGATC AAATACCAGT TCGTGATACA ATCTTTGCGC TTTCGAGCGG CTCGTTGCCT
TCCGGTATCG CCGTGATACG GATCTCCGGT GCAGATACGA GAGCTGTCCT GGAACGAATG
GCTGGCGGCC TTTCGGAAGC CAGATTCGCC AAGCTGACCA GCATCTACAG CGCCGAAAGA
GAGGTCCTCG ACCGAGCACT CTGCCTCTTC TTTCCTGCTC CCGCCAGCTT TACGGGGGAG
GATTGCGCGG AATTGCATTT GCATGGCGGG CGGGCCGTAG TGGCGGCCGT GCTGAACGAG
CTTGCCGCAT TTCCTGGACT ACGGATGGCC GAGGCTGGTG AGTTCACGAA ACGGGCTTTT
CTGAACGGAA AAATGAACCT TACCGAGGCT GAAGCGCTTT CCGATCTAAT TGCTGCAGAA
ACGGAAGCTC AGAGGCGCTT CGCACTCGTG AACAGCAGTG ATATGCGCAA GCGCCTCTAT
GACGGATGGC GCCGCCGCCT CATCCATGCC CGAGCCATGA TAGAGGCAGA GCTTGATTTT
GCCGATGAAT CGGATGTGCC TGGCTCTGCT GGCGCTACCG TGTGGGAGGA CATTCGCCGG
CTTCGGCAGG AAATTGTTGA ACATGCTTCT TCCTACCGCA AGGCTGAGAT CATCAGGGAC
GGGTTCCAAA TCGTTATCCT GGGCGCACCA AATGCGGGAA AGTCCAGCCT TCTCAATGCG
CTGGCGCGGC GTGACGTAGC CATTGTAACG GAGGAGCCTG GCACGACGCG GGATATTCTC
GAGGTCAGCT TGGACATTGA CGGGACGAAA GTAGTCCTTG CCGACACGGC TGGCATCCGC
GAGGCGGCCG GCCGAGTAGA AGCGCTTGGT ATCGAACGTT CTCTGAGGCG TGCCAATGAG
GCCGACTTGG TGCTGCTTCT GGAAGACGTC ACAAATCCGT CGACACCGGA GGTGCCGCAG
GGCAAGCCGG TGATCACAAT AGGGAACAAA GCCGATTTGA TCACGGATAC ACCAGCCGCT
TCATACAATT GTTTGATTTC CGCCAAAACC GGATTGGGAC TGGACCGCCT GATGGAGCTG
ATAAGTCAAG CCAGCGCAGG CTACTCGAAT TTCGCAGGGG AGATCTTGCC CTTTCGCGAG
CGGCATGTGG CACTTTTAGG CCAGGCGGCA GACGCGCTTG AGGCTGGAAT TGACGGCGAA
AATATTGGGC TTGAGCTGAG AGCTGAATGC CTGCGTTTAA GCTCGCTTGC TTTGGGCCGC
ATCTCCGGTG AGATCGATGT TGAAGATTTG CTCGATGCGA TCTTCTCCAC TTTCTGCATT
GGAAAATGA
|
|---|
| Protein sequence | MPDQIPVRDT IFALSSGSLP SGIAVIRISG ADTRAVLERM AGGLSEARFA KLTSIYSAER
EVLDRALCLF FPAPASFTGE DCAELHLHGG RAVVAAVLNE LAAFPGLRMA EAGEFTKRAF
LNGKMNLTEA EALSDLIAAE TEAQRRFALV NSSDMRKRLY DGWRRRLIHA RAMIEAELDF
ADESDVPGSA GATVWEDIRR LRQEIVEHAS SYRKAEIIRD GFQIVILGAP NAGKSSLLNA
LARRDVAIVT EEPGTTRDIL EVSLDIDGTK VVLADTAGIR EAAGRVEALG IERSLRRANE
ADLVLLLEDV TNPSTPEVPQ GKPVITIGNK ADLITDTPAA SYNCLISAKT GLGLDRLMEL
ISQASAGYSN FAGEILPFRE RHVALLGQAA DALEAGIDGE NIGLELRAEC LRLSSLALGR
ISGEIDVEDL LDAIFSTFCI GK
|
|---|
| |