Gene Meso_3107 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMeso_3107 
Symbol 
ID4183255 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChelativorans sp. BNC1 
KingdomBacteria 
Replicon accessionNC_008254 
Strand
Start bp3376830 
End bp3377381 
Gene Length552 bp 
Protein Length183 aa 
Translation table11 
GC content59% 
IMG OID638068999 
ProductRNA polymerase sigma factor 
Protein accessionYP_675644 
Protein GI110635436 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGGCGT CACCAAGTTT CCGCGACGGT CTCTTGGCCG CAGTGCCAAC GCTGCGCGCT 
TTTGCAGTAT CGCTCGCAAA AAATGCTGAC CGGGCCGATG ATTTGGTCCA GGAAACGCTG
GTTAAAGCCT GGGACAAGCA GGACAGCTTC CAACCAGGCA CCAATCTCAA GGCTTGGCTC
TTCACCATCC TTCGCAACGA GTTTTATTCC CAAATGCGCA AGCGTCGGCG CGAGGTTGAA
GATAGCGACG GAAGCATCAC CGCGCGCTTG TCTATCCATC CCGCCCAAGA GGGCAATTCG
GACCTGAACG ATTTTCGCCG CGCGCTTGCT CTCCTGCCCG AAGATCAGAG GGAGGCCATT
ATACTGATCG GGGCCTCCGG GTTTTCCTAT GAGGAGGCCG CCGAGATCTG CGGATGCGCG
GTAGGCACGA TCAAATCCCG TGTCAGCCGG GCGCGCAGTC GACTGCAGGA GATCCTGTCA
ATCTCGGGGG AAGGTGATTT CGGGCCCGAT GCGATTACGG CGCAGGTGAC CAACTCAGCG
GCAGTGGCTT AG
 
Protein sequence
MSASPSFRDG LLAAVPTLRA FAVSLAKNAD RADDLVQETL VKAWDKQDSF QPGTNLKAWL 
FTILRNEFYS QMRKRRREVE DSDGSITARL SIHPAQEGNS DLNDFRRALA LLPEDQREAI
ILIGASGFSY EEAAEICGCA VGTIKSRVSR ARSRLQEILS ISGEGDFGPD AITAQVTNSA
AVA