| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Meso_2472 |
|---|
| Symbol | |
|---|
| ID | 4183295 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chelativorans sp. BNC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008254 |
|---|
| Strand | + |
|---|
| Start bp | 2649789 |
|---|
| End bp | 2651792 |
|---|
| Gene Length | 2004 bp |
|---|
| Protein Length | 667 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638068361 |
|---|
| Product | choline/carnitine/betaine transporter |
|---|
| Protein accession | YP_675021 |
|---|
| Protein GI | 110634813 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1292] Choline-glycine betaine transporter |
|---|
| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAAGT TTGTAATCAA TCCGCCGGTA TTTTTCGGCT CAGTAGCTAT TACCGCGATA
TTTCTCGGTG TCGGCGTTCT TTTTCCGGGC CAAGCGGAGG CGATCTTCAC CGCTGTGCAG
ACCTGGATTC TCGGCTCCTT TGGCTGGCTG TACCTGCTCG CAGTTGGGAT CTTCATCGGT
TCGGTGATCC TCTTTGCCGC CAGCGGGTTC GGCCATCTGA AGCTGGGGCC GGACGATTCC
ACGCCCGACT TCCATTACAT GTCCTGGGTG GCCATGCTCT TTGCGGCGGG CATGGGCATC
GGCCTCATGT ATTTCGCCGT CGGCGAACCG ATGACGCATT TCGCTGCTCC GCCCGAGGCA
GAGCCACTCA CCATCGCTGC CCAGCGGCAG GCCATGAGCG TGACCTTTTT CCACTGGGGT
CTCCACGCCT GGGCTATTTA TGCCGTGGTG GGCCTCTCGC TTGCCTATTT CGGCTATCGC
TACAATCTTC CTCTCACCGT GCGGTCGGGC CTTTACCCGC TGCTCAAGAA CCGCATCGAC
GGGCCGATCG GGCATGCGGT CGACATCTTC GCAATCTGCG GCACCCTTTT TGGCATCGCG
ACATCACTCG GCTTCGGCGT TCTGCAGATC AATGCGGGTC TTAGCTATCT TCTCGGCGTG
CCGAACAGCG CCGCCGTTCA GCTGGTGCTT ATCGCCGTAA TCACCACCGT TGCGACCATC
TCCGTCGTCA CCGGAGTGGA TAAGGGCATC CGGCGTTTGA GCGAGCTGAA CCTGATCCTC
GCGGTACTGC TCATGCTCTT CGTGCTGGCG GTCGGCCCCA CGGCGCAGCT CTTGCGCGAT
TTCGTGCAGA ATATCGGCTT CTATCTTGAC ACGATCGTAT TGCGGACCTT CAACATCTAT
GCCTATGAGC CGCGGCCCTG GATCGACGCC TGGACGCTCT TTTACTGGGC GTGGTGGATC
TCATGGTCGC CCTTTGTCGG CATGTTCATC GCCCGCATTT CGCGCGGCCG CACCGTGCGG
GAGTTCGTGA TCGCCGTCCT TTTCATTCCC GCCGGCTTCA CGTTTTTCTG GATGACGGTT
TTCGGCAACA CCGCCCTTTT CATCGATACG ACCGTCGCCA ATGGGGCCCT GTCCACTGCG
GTCACCGATG ATCTTTCCGT GGCGCTGTTC CAGTTCTTCC AATATCTTCC GCTTCCAGCC
GTCACTTCCT CGCTCGCTGT CCTGCTGGTG GCGGTGTTCT TCATCACCTC CTCCGATTCC
GGCTCTCTTG TCGTCGATAC GATCGCGGCA GGCGGCGAGA CGGAGACCAG CATCGCCCAG
CGCGTGTTCT GGTGTGTCCT GGAAGGTCTG ATCGCGGCCG TGCTTTTGGT TGCCGGCGGG
CTTGCGGCGC TGCAATCAGC CACCATCGCA ACGGCACTCC CCTTCACGCT TATCATGCTT
GTGCTGATCT GGGCGCTCTT CAAGGGCATG AAGTCAGACC TGGCGCAGCG GCAGGTCGGG
CATATGGCTG TCACGCCTCA AGCCTATCCG GCGGCCGGGC TGACTTGGCA GCGCCGGCTG
GGGTTGATCC TGAATGCGCC CACGGAGCAG GAGGTGGCCG ACTATATCGC GAAGGTGGTC
ACGCCGGCGC TCGAAAATGT GGCGCAGGAA ATGGAGAAAC GGGGAAGCAA GGCGACCGTC
TCACACGAAA ACGGGGAGCA TTCGGTCTCG CTCACAGTTC CCGCCAGTGG GGTGCGAGAT
TTCGTCTATG GGGTCCAGCC GGCGGCCCAT CGTCTGCCGG CCTTCTCCGC CCTTGAAGCG
GCGCAAGGGG ATCTGCGTTT CGAGGCACGC ACCTTCTTCA GCGATGGCAG CCGTGGCTAC
GATCTTATGG GCATGACGCA GGAGCAGATC ATCGCGGATG TGCTTGCGCA ATTTGACCGT
TACCTGCAGC TCGTGCAATC GCCCGAGGCT TCACTGGTGA TCGGCGCGCC TGAGCACGCG
CCGGATATGC CTGTCCGGCA CTGA
|
|---|
| Protein sequence | MSKFVINPPV FFGSVAITAI FLGVGVLFPG QAEAIFTAVQ TWILGSFGWL YLLAVGIFIG
SVILFAASGF GHLKLGPDDS TPDFHYMSWV AMLFAAGMGI GLMYFAVGEP MTHFAAPPEA
EPLTIAAQRQ AMSVTFFHWG LHAWAIYAVV GLSLAYFGYR YNLPLTVRSG LYPLLKNRID
GPIGHAVDIF AICGTLFGIA TSLGFGVLQI NAGLSYLLGV PNSAAVQLVL IAVITTVATI
SVVTGVDKGI RRLSELNLIL AVLLMLFVLA VGPTAQLLRD FVQNIGFYLD TIVLRTFNIY
AYEPRPWIDA WTLFYWAWWI SWSPFVGMFI ARISRGRTVR EFVIAVLFIP AGFTFFWMTV
FGNTALFIDT TVANGALSTA VTDDLSVALF QFFQYLPLPA VTSSLAVLLV AVFFITSSDS
GSLVVDTIAA GGETETSIAQ RVFWCVLEGL IAAVLLVAGG LAALQSATIA TALPFTLIML
VLIWALFKGM KSDLAQRQVG HMAVTPQAYP AAGLTWQRRL GLILNAPTEQ EVADYIAKVV
TPALENVAQE MEKRGSKATV SHENGEHSVS LTVPASGVRD FVYGVQPAAH RLPAFSALEA
AQGDLRFEAR TFFSDGSRGY DLMGMTQEQI IADVLAQFDR YLQLVQSPEA SLVIGAPEHA
PDMPVRH
|
|---|
| |