| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Meso_0515 |
|---|
| Symbol | |
|---|
| ID | 4180796 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chelativorans sp. BNC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008254 |
|---|
| Strand | - |
|---|
| Start bp | 569664 |
|---|
| End bp | 571652 |
|---|
| Gene Length | 1989 bp |
|---|
| Protein Length | 662 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638066397 |
|---|
| Product | conjugal transfer coupling protein TraG |
|---|
| Protein accession | YP_673083 |
|---|
| Protein GI | 110632875 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.246818 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGCGA CGAAAATCCT CTGGGGCCAG ATCACCACCG TGTTCCTCAT CGTGCTGCTC
ACGACCTGGG GCGCGACCCA ATGGACCGCC TGGCGGCTCG GTTTTCAGGC GCAGCTCGGC
ACGCCGTGGT TCGAGCTGGC GGGTTGGCCG GTCTACTATC CACCCGCCTT CTTCTGGTGG
TGGTACTTCT ACGACGCCTA TGCCCCGCCG ATCTTTGTTG AAGGCGCTAT GATCGCCGCC
TCAGGCGGCT TCATCTCCAT CGCCGTCGCC ATCGCAATGT CGGTATGGCG CGCCCGTGAG
GCGAAGAATG TCGAGACCTA CGGCTCGGCC CGCTGGGCTG AAATCCGGGA GGTGAAGGCG
GCAGGACTGC TCGGACCCGA TGGCGTCGTC CTCGGAAAGC TAGGCGACGC CTATCTCCGA
CATGATGGAC CCGAGCATGT CCTGTGCTTC GCACCAACCC GATCGGGCAA GGGTGTCGGT
CTCGTTGTCC CGACGCTCCT CACCTGGCCG GGCTCCGCCA TCGTCCACGA TATCAAGGGC
GAGAACTGGC AGCTGACCGC CGGCTTCCGC GCGAGGCACG GCCGCGTCCT GCTGTTCGAT
CCCACCAACG CCAAGTCGGC CGCCTACAAT CCGCTCCTGG AAGTGCGACG GGGAGAGTGG
GAAGTTCGCG ACGTGCAAAA CGTCGCCGAC GTTCTCGTCG ACCCCGAGGG CTCACTCGAC
AAGCGCAATC ACTGGGAGAA GACGAGCCAT TCTTTGCTCG TCGGTGCCAT CCTGCATGTG
CTGTACGCGG AAGAGGAGAA GACGCTCGCC GGTGTAGCCG CCTTCCTGTC GGATCCGCGC
CGTCCGATCG AAGCCACGCT GAAGGCGATG ATGACGACGC CCCATCTCGG CCTTGGTGGC
CCTCATCCCG TCGTGGCGTC GACAGCGCGC GAACTCCTCA ACAAGAGCGA CAACGAGCGC
TCGGGCGTCC TGTCCACCGC CATGTCCTTC CTGGGCCTCT ACCGCGATCC GGTGGTGGCG
GAGGTGACGC GCCGCTGCGA CTGGCGGATC GCCGACCTCA TCGCCGATGA GAAGCCAGCA
ACGCTCTACC TTGTGGTTCC GCCATCCGAC ATCTCCCGGA CGAAGCCGTT GATCCGGCTC
GTGCTCAACC AGATCGGCCG ACGCCTGACC GAGGATCTGC ATGCGCGAGA CCGGCGGCAT
CGTGTGCTGA TGATGCTCGA CGAGTTTCCA GCTCTCGGCC GCCTCGACTT CTTTGAGAGC
GCGCTCGCCT TCATGGCGGG CTACGGCCTG AAGTCGTTCC TCATAGCCCA GTCATTGAAC
CAGATCGAAA AGGCCTATGG CCCGAACAAT GCGATCCTCG ACAACTGCCA TGTGCGCGTG
AGCTTCGCCA CCAATGACGA GCGCACCGCC AAGCGCGTGA GCGACGCCCT CGGTACGGCG
ACCGAGATGA AGGCGATGCG GAACTATGCC GGGCATCGGC TCAGCCCCTG GCTCGGTCAT
CTGATGGTCT CGCGCTCGGA GACGGCGCGG CCGCTCCTTA CCCCTGGCGA GGTGATGCAG
CTACCGGCGA CGGATGAAAT CGTGATGGCC GCCGGTGTCC ATCCCATCCG AGCCAAGAAG
GCCCGTTACT TCGAGGATCG CCGCTTCAAG GAGCGCATCC TGCCGTCACC CGACCCGGCG
AAATGCGGGC GTTCGGCCCG AAGGGACGCC TGGTCCGAGT TGAAACCGCA GCGGCCCGAC
GCATTGCTCG CGGCTGAGCT CGACAAGGCG GAAGACGCTG CCAATGGCGG TCTGCGGCGC
GAGCCCGAAC TGCCCGACCA TGTCGCGATC GCCAAGGAGA CGACCGGACC TGCCGCGGCC
GACGAGTTTT CCATCATGCT GGACGATGAG CCGGAAGACG CGGCGCGGCA GCGTCAGGCG
CTGCGCCAGC AGATGCGCGG CGTGGCGAGA CAGGTCGCGC TCGATCCCAA TGACGGCATC
GAACTGTGA
|
|---|
| Protein sequence | MSATKILWGQ ITTVFLIVLL TTWGATQWTA WRLGFQAQLG TPWFELAGWP VYYPPAFFWW
WYFYDAYAPP IFVEGAMIAA SGGFISIAVA IAMSVWRARE AKNVETYGSA RWAEIREVKA
AGLLGPDGVV LGKLGDAYLR HDGPEHVLCF APTRSGKGVG LVVPTLLTWP GSAIVHDIKG
ENWQLTAGFR ARHGRVLLFD PTNAKSAAYN PLLEVRRGEW EVRDVQNVAD VLVDPEGSLD
KRNHWEKTSH SLLVGAILHV LYAEEEKTLA GVAAFLSDPR RPIEATLKAM MTTPHLGLGG
PHPVVASTAR ELLNKSDNER SGVLSTAMSF LGLYRDPVVA EVTRRCDWRI ADLIADEKPA
TLYLVVPPSD ISRTKPLIRL VLNQIGRRLT EDLHARDRRH RVLMMLDEFP ALGRLDFFES
ALAFMAGYGL KSFLIAQSLN QIEKAYGPNN AILDNCHVRV SFATNDERTA KRVSDALGTA
TEMKAMRNYA GHRLSPWLGH LMVSRSETAR PLLTPGEVMQ LPATDEIVMA AGVHPIRAKK
ARYFEDRRFK ERILPSPDPA KCGRSARRDA WSELKPQRPD ALLAAELDKA EDAANGGLRR
EPELPDHVAI AKETTGPAAA DEFSIMLDDE PEDAARQRQA LRQQMRGVAR QVALDPNDGI
EL
|
|---|
| |