Gene Patl_4306 details

Gene Information

• Locus tag: Patl_4306
• ID: 4176096
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: -
• Start bp: 5176957
• End bp: 5178858
• Gene Length: 1902 bp
• Protein Length: 633 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 638057343
• Product: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
• Protein accession: YP_663859
• Protein GI: 109900604
• COG category: [D] Cell cycle control, cell division, chromosome partitioning
• COG ID: [COG0445] NAD/FAD-utilizing enzyme apparently involved in cell division
• TIGRFAM ID: [TIGR00136] glucose-inhibited division protein A

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTTATC AACAACAATT TGACGTAATC GTAGTTGGTG GTGGTCACGC AGGCACTGAA 
GCGGCCCTTG CTGCTGCGCG TATGGGATCA AAAACCCTGT TACTGACACA TAACGTTGAA 
ACTTTAGGTC AGATGTCATG TAACCCAGCA ATTGGTGGGA TCGGCAAAGG TCACCTTGTA 
AAAGAAATTG ATGCTTTAGG TGGCAGTATG GCTAAAGCTA TCGACAAAGG CGGGATCCAG 
TTCAGAACAC TGAATTCAAG CAAAGGGCCT GCCGTAAGAG CAACGCGCGC ACAAGCGGAT 
AGATCCTTAT ATCGATCAGC TATTCGCGAT ATCGTTGAAC ATCAGGACAA CCTCACTCTT 
TTCCAACAAT CTTGTGATGA TCTTATCGTG GAAAACGATC AAGTCACAGG TGTGGTGACT 
CAGATGGGTC TTAAATTCCG TGCGAAATCC GTTGTAATCA CTGTAGGCAC GTTTTTAGGT 
GGTACCATTC ACATCGGCAT GGAAAATTAC AAAGGAGGCC GTGCCGGCGA TCCTCCTTCG 
ATTGCGTTAG CAGATCGCTT ACGTGCTTTA CCTTTTCGTG TATCACGTTT AAAAACGGGT 
ACTCCCGCAC GTTTGGATGC CAGAACACTT GACTACAGTG TGATGCAAGA GCAATTAGGT 
GACAGCCCTA CTCCTGTATT TTCATTTATG GGAAAAAGGG AAGACCATCC AAGACAAATT 
GCGTGTTACA TCACCCATAC AAACAGTAAA ACCCACGATA TCATTCGTGG TGGACTAGAC 
CGTTCCCCTA TGTACACTGG GGTGATAGAG GGAATTGGCC CACGCTATTG TCCTTCGATA 
GAAGACAAAA TTAATCGCTT TGCAGATAAA GATTCTCATC AGATATTTGT AGAACCTGAA 
GGCTTGAACA GTATTGAAGT ATATCCAAAC GGAATATCGA CAAGCCTCCC ATTTGATGTT 
CAGTTTGAGC TCGTTCGTTC AATCAAAGGT TTCGAAAATG CACATATTAT TCGTCCAGGA 
TATGCGATCG AATATGATTT CTTTGATCCG CGAGATCTAA AACAAACTCT TGAGACCAAG 
TTTATTAAAG GCTTGTTCTT CGCTGGTCAA ATCAACGGTA CCACGGGCTA TGAAGAAGCT 
GGGGCACAAG GTTTAATTGC CGGAGCAAAT GCATCTTTAC AGTGTCAAGG TAAGGATCCG 
TTGATCCTAC GTCGCGATGA AGCATACATG GGAGTACTGA TCGACGATCT GGCTACCATG 
GGCACCAAAG AACCCTATCG CATGTTCACT AGCCGCGCTG AATACCGCTT GTTGTTACGT 
GAAGATAACG CAGACATTAG GTTAACGGCC AAGGGTCATG AGCTAGGTTT AGTTGATGAA 
GAACGCTGGC AAGCATTCAA TATTAAACTG GAAGCCATCG AGCTTGAACG CCAGCGTCTG 
CGCGATACTT GGGTACATCC TAAGCATGCA GCAGCAGAAG CACTGAATCC ATTGTTGAAA 
AATGCATTAA GTAAAGAAAA TACCTTAGAA GATTTAATCC GTCGTCCTGA AATGACGTAT 
GAAACGTTAA TGAACGTCAC TGAATTTGGC CCTGGGATCA CCGATCCTAA AGCGGCGGAG 
CAAGTAGAAA TACAGATCAA ATACGCGGGC TATATTGAAC GCCAGCAAGA TGAGATCGCA 
AAATCACGTA AAAATGAAAA TACTTTGATC CCTCTTGATT TCGATTACAG CCAGATTTCA 
GGCCTATCAA ATGAAGTTGT GGCGAAGCTA AGCGACGCCA AACCTGAAAC ATTAGGTTTA 
GCTTCACGTA TATCAGGTAT TACCCCAGCC GCTATTTCTT TGCTTCTGGT CTATTTGAAA 
AAGCACGGCT TGCTTAGAAA AACAGAGCGT AAAACTGCAT AA 

 

Protein sequence

MFYQQQFDVI VVGGGHAGTE AALAAARMGS KTLLLTHNVE TLGQMSCNPA IGGIGKGHLV 
KEIDALGGSM AKAIDKGGIQ FRTLNSSKGP AVRATRAQAD RSLYRSAIRD IVEHQDNLTL 
FQQSCDDLIV ENDQVTGVVT QMGLKFRAKS VVITVGTFLG GTIHIGMENY KGGRAGDPPS 
IALADRLRAL PFRVSRLKTG TPARLDARTL DYSVMQEQLG DSPTPVFSFM GKREDHPRQI 
ACYITHTNSK THDIIRGGLD RSPMYTGVIE GIGPRYCPSI EDKINRFADK DSHQIFVEPE 
GLNSIEVYPN GISTSLPFDV QFELVRSIKG FENAHIIRPG YAIEYDFFDP RDLKQTLETK 
FIKGLFFAGQ INGTTGYEEA GAQGLIAGAN ASLQCQGKDP LILRRDEAYM GVLIDDLATM 
GTKEPYRMFT SRAEYRLLLR EDNADIRLTA KGHELGLVDE ERWQAFNIKL EAIELERQRL 
RDTWVHPKHA AAEALNPLLK NALSKENTLE DLIRRPEMTY ETLMNVTEFG PGITDPKAAE 
QVEIQIKYAG YIERQQDEIA KSRKNENTLI PLDFDYSQIS GLSNEVVAKL SDAKPETLGL 
ASRISGITPA AISLLLVYLK KHGLLRKTER KTA