Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_4198 |
Symbol | |
ID | 4175987 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 5055940 |
End bp | 5056827 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638057234 |
Product | LysR family transcriptional regulator |
Protein accession | YP_663751 |
Protein GI | 109900496 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.408644 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAATCAGT TAAATTACCA GCACTTATAT TACTTTTACG TCACGGCGAC CGAAGGCAGC ATCATAAAAG CAGCCAGCGT TCTGCACCTC ACACCACAAA CCATCAGCGA ACAAATTCGT ACCCTTGAGG CATACTTCGG TTTTGACTTG TTTGACAGAG TGGGTAAACG CTTACAGCTC AATAGCCAAG GTCAACTCAC CTACAATTTT GCTAAAAACA TTTTTAGTAT GGGTAACGAG TTACTGCTTT CAGTGAGACA CCAACAGCAA AACCAACAAC ACGTGTTGTC CATAGGGGTG ACCGATGTGT TGCCTAAAAT TCTTGCATTC GAAATGTTTC AACGCAGCTT AACAGTCCAT CCGAATGTGC GCCTGGTATG TAAAGAAGGG GATCTAAATA GCCTTACCGC AGAGCTGGCA CTGAGTAAAA TTGATGGTAT TTTATCTGAC CAACCATTAC TCAATACCAG CAATGTTAAA GCTTATAATC ACTTGCTTGC TCGCAGTGGA TTAAGCTTTT TTGTTGCTCA GGACCTAGCA GAGAAGTTCG TTGACTTCCC ACAGTGTCTA GATAACCAAC CCTTCTTATT ACCCGGCGAT AAATCAGCCC AAAAGCTATC GATACTTGCT TGGTTTGCCA AACACAATAT CAATCCACAG ATTGCAGCTG AATTTGACGA CTGCGCACTA ATGAAACTAT TTGCTCAACG CGGCTACGGG GTATTTTGTG CACCAACTTC CGTAGAGCAT CATATAGAAA AACAATACAA GGTACGGGTG ATTGGTCGCA CTGATATGAT CACGGAACAT TTGTATCTGA TTTCCCCGGA GCGAAAAGTC ACCAACCCTC TATTATCACC GTTAGTCATT AAAGGCGCGG CTCGTTAA
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Protein sequence | MNQLNYQHLY YFYVTATEGS IIKAASVLHL TPQTISEQIR TLEAYFGFDL FDRVGKRLQL NSQGQLTYNF AKNIFSMGNE LLLSVRHQQQ NQQHVLSIGV TDVLPKILAF EMFQRSLTVH PNVRLVCKEG DLNSLTAELA LSKIDGILSD QPLLNTSNVK AYNHLLARSG LSFFVAQDLA EKFVDFPQCL DNQPFLLPGD KSAQKLSILA WFAKHNINPQ IAAEFDDCAL MKLFAQRGYG VFCAPTSVEH HIEKQYKVRV IGRTDMITEH LYLISPERKV TNPLLSPLVI KGAAR
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