| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4178 |
|---|
| Symbol | |
|---|
| ID | 4175967 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 5030240 |
|---|
| End bp | 5031346 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638057214 |
|---|
| Product | filamentation induced by cAMP protein Fic |
|---|
| Protein accession | YP_663731 |
|---|
| Protein GI | 109900476 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3177] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.130851 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATATCG AAAAAGTATG GCCAAGCAAT AATGCAAACT ACCGATGCTT AATGCCTGAA
AGTCTTGCCA ATCAAACTTG TGCATTAGCG TTACCAACAC CACTAGTATC GACGTTTTTA
GAAACGCATT GTCAAGTCGG CAACTTGCAG CGTTTTACGT CACGTTATTT AGCTGGGGGG
TTCAGCCTAA AGCAGGGCAG GTTAGTCTCT CGAAAGCGTC TATCGCTGAT GCGTTTGGGC
TTTAAGCGCA AGGATGAGTT GGCTGAATCT GTAACACTAC AATCCGAACG GTATCGAAGC
GCTTTACAAT CATTACGCAA AAGACCACTT ACACTGGGCA CTTTGTGTGA AGTGCATAAG
TCACTTGATC CTCATCATCA CAATGGAGGG CGTTTCAGAG ATGTGCAAAA TTGGATAGGA
GGGCGCTCAC CCGATACGGC GCATATCGTT CCACCGCCCC CTGAAAACGT CTCGGATTTA
ATGACCGACT GGATTAACTA CGTTAACAAT ATCGAGCAAG TAGGCATTGA AGATATCATT
ATGTTATCCA ATCAATTTAT TCTGATCCAT CCATTCAATG ATGGTAATGG GCGCCTTAAC
AGAGCAATAG TTGATGCGCT TTTGAGTCAA ATTATGCGGG ATGAAAAGGC ATATATCAGT
CCATTTCTAT TTCGTTTGGC TCACCAACAT AATGGTTACT TAGATGCGCC AAGTGCTATT
ATGCAAGGGC AATGGCAGCA GGTTTTTGAT TTTTGGGATG AGGCTATTCA ATGGAGTATC
AACACGACTG AGACCTTGTG CAAAAGGCTT ATAATGGCAA ATTCATTCAT TCAAAAAAAA
CTAACACTAA GACAACTCAG CCAGCATGCA GCCACTTTAC TGTCGCACAT CTCAGAGCAA
CCAATCGTTA CTCCTGCTTA TCTTTCAGGG CAATTTGGAT GGACATTACT CGAAGCCAGT
ACAGCGATCA CTGAACTGTT GGAATGCGGG ATTTTGAACG AGCATAGGGT GAAAGAACCT
ATTAACACCA TTATTTATGA TTGTCAGGAA ATATTCGACG CGTGGATGGA AATGGATGAA
GTGTTGTTCC GTGTATCGAG TTCATAG
|
|---|
| Protein sequence | MYIEKVWPSN NANYRCLMPE SLANQTCALA LPTPLVSTFL ETHCQVGNLQ RFTSRYLAGG
FSLKQGRLVS RKRLSLMRLG FKRKDELAES VTLQSERYRS ALQSLRKRPL TLGTLCEVHK
SLDPHHHNGG RFRDVQNWIG GRSPDTAHIV PPPPENVSDL MTDWINYVNN IEQVGIEDII
MLSNQFILIH PFNDGNGRLN RAIVDALLSQ IMRDEKAYIS PFLFRLAHQH NGYLDAPSAI
MQGQWQQVFD FWDEAIQWSI NTTETLCKRL IMANSFIQKK LTLRQLSQHA ATLLSHISEQ
PIVTPAYLSG QFGWTLLEAS TAITELLECG ILNEHRVKEP INTIIYDCQE IFDAWMEMDE
VLFRVSSS
|
|---|
| |