Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_4127 |
Symbol | |
ID | 4175916 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 4964994 |
End bp | 4965539 |
Gene Length | 546 bp |
Protein Length | 181 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638057163 |
Product | TetR family transcriptional regulator |
Protein accession | YP_663680 |
Protein GI | 109900425 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAAGA AACAACTTTT ACTTAAGGCC GCTGAAGCTA AAGTAAGAAC CGGTGGTTAC AACAACTTTA GCTTTCGTGA ATTGGCCGAC GAAATCGGCA TTAAAAGCTC AAGTGTGCAT TATCATTTCC CGACCAAAGC GGATTTAGGC GCTGAATTGG CGCGCCAATA TACAGATAAC TTCTTAACCC ATTTAGGTGC GCCAGAAGTG TTAATTGCTG AGGGTAAAAA ACCTATTGAA GTGTATTTGC AGCAATTTCA GTGCGCGCTA ACTGAAGACA AAAAAATGTG CCTTTGTGGC TTACTCGGCG CTGAAACCGA CGGCCTACCT GAAAAGGTGA AAGCGCAAAC GCAGCGATTC TTCGAGCGAA ATATTACCTG GTTAACCCAA GCTTACCAGC AAGCAGACGG CGCGAGCGAG CAAGCCGCTA AGGGCCAAGC GATTGCTACC TTGTCTTTAC TAGAAGGAGC CATGTTGGTC AGCAAAGCCA TGAACGATAC TGAAATTTTC GCCACGGCCA GTGCTGGCTT ATTGGCTTCA CGCTAA
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Protein sequence | MSKKQLLLKA AEAKVRTGGY NNFSFRELAD EIGIKSSSVH YHFPTKADLG AELARQYTDN FLTHLGAPEV LIAEGKKPIE VYLQQFQCAL TEDKKMCLCG LLGAETDGLP EKVKAQTQRF FERNITWLTQ AYQQADGASE QAAKGQAIAT LSLLEGAMLV SKAMNDTEIF ATASAGLLAS R
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