| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4117 |
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| Symbol | |
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| ID | 4175906 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4951570 |
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| End bp | 4952442 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638057153 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_663670 |
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| Protein GI | 109900415 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0492865 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGACTA CACATTCACG TACGCTTGCA CAGATCATGC TTTTTCCATC GGTAGTATTG
CTACTAGCGT GGATGATAGT ACCGCTGTGC ATGACCCTGT ATTTCTCGTT TTTAGATTAC
AACCTACTTA GCCCAGGAAC AGAGGAATTC ATTGGTTTTC TTAACTATGA GTTTTTCCTG
ACTGATCCGG CTTTCTTTGC ATCATTCTTT AACACCCTGC TACTCGTTGG CGGTGTGTTG
CTCATCACGA TTTGTGGCGG CATCGGCTTG GCAATTTTGT TAGACCAAGC TATTTGGGGC
CGAAATTACG TGCGCATTAT GGTATTGGCA CCATTCTTTG TGATGCCCAC GGTGTCAGCT
CTAGTATGGA AAAATATGCT CATGAACCCG GTTAACGGGT TGTTTGCTCA CTTTGCAACG
CTCATTGGCG TTGATCCGGT GGATTTCTTC GCTCAAGTAC CTTTGCTATC CATTATTATT
ATTGTGTCTT GGCAATGGTT GCCCTTCGCG GCGCTGATTT TATTGACCGC CATTCAATCA
TTAGACAGAG AACAACTAGA AGCGGCCGAC CTTGATGGTG CAGGCCCATT CAGTAAGTTC
TTTTACATTG TGCTACCCCA CCTATCCCGT GCGGTTACCG CAGTGATCTT GATTGAAACC
ATTTTCTTAC TGTCAATTTT CGCCGAAATA CTGGTCACTA CCAGCGGCGG CCCTGGGTAC
GAATCAACCA ACATTACGTA TCTTATTTAC ACCCAATCCT TGTTGCAGTT TGACGTCGGT
GGCGGCTCAG CAGGCGGAAT AATCGCCGTT ATTATCGCCA ATATCGTGGC TATCTTCCTT
ATGCGCCTCA TCGGCAAGAA CTTAGAGGGT TAA
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| Protein sequence | MATTHSRTLA QIMLFPSVVL LLAWMIVPLC MTLYFSFLDY NLLSPGTEEF IGFLNYEFFL
TDPAFFASFF NTLLLVGGVL LITICGGIGL AILLDQAIWG RNYVRIMVLA PFFVMPTVSA
LVWKNMLMNP VNGLFAHFAT LIGVDPVDFF AQVPLLSIII IVSWQWLPFA ALILLTAIQS
LDREQLEAAD LDGAGPFSKF FYIVLPHLSR AVTAVILIET IFLLSIFAEI LVTTSGGPGY
ESTNITYLIY TQSLLQFDVG GGSAGGIIAV IIANIVAIFL MRLIGKNLEG
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