| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4116 |
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| Symbol | |
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| ID | 4175905 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4950158 |
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| End bp | 4951501 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638057152 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_663669 |
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| Protein GI | 109900414 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000719407 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGAAAA AGATAACCAA AACCACATGT GCGGCGCTTA GCATGAGCGC AGCACTTTCT
ACAAGCACTG CTCTGTTTAT GGCCTCAGCG GTAAATGCTG AAACCATCAC CATCGCTACC
GTAAACAACG GCGATATGAT CACCATGAAA GAGCTGAGCT CAGATTTTGA AGCTAAGCAC
CCGGACATCG ATCTTAAATG GGTCACGCTT GAAGAGAACA TTCTGCGCCA ACGCGTTACT
ACAGATGTGG CCACCAAAGG TGGGCAATAC GATGTGATGA CGATCGGTAC GTACGAAGTG
CCGATTTGGG GTAAGCAAGG CTGGCTCACT GAGTTAGATG GCTTAGGCCC AAATTACGAT
GAGGAAGACT TGTTACCCGC AATCAGAAGC GGTTTATCCC TAAATAATAA GCTTTATGCA
GCGCCCTTTT ACGGTGAAAG CTCTATGGTG ATGTACCGCA AAGACTTGCT CGAAAAAGCA
GGCCTTGAAA TGCCAACCAA GCCAAGCTGG AAGTTTATTC GTCAAGCGGC CAAAGCTATG
ACAGACGGTG ACTCAGGTGT TTATGGTATT TGTTTACGCG GTAAAGCGGG CTGGGGCGAG
AACACAGCGC TTATCACGGC CATGTCGAAC TCGTTTGGCG CTCGCTGGTT TGATGAAAAC
TGGAAGCCGC AATTCAATAC CCAAGAGTGG AAAGACACCC TGCAATATTA TGTTGATGTG
ATGGAAGAGT CGGGCCCTCC AGGTGCATCG TCAAATGGCT TTAACGAAAA CCTCGCGTTA
TTCCAAACAG GTAAATGTGG TATGTGGATT GATGCCACAG TAGCAGGTGC ATTTGTCACT
AATAAGAAAG ATTCTGAAGT CGCTGACAAA GTCGGGTTTG CTATGGCACC GGACATGGAC
CTTGGCAAAC GCGGGAACTG GCTATGGGCA TGGACATTAG CAGTACCGTC AAGCAGCAAA
AAAGCCGATG CAGCGCAAAA GTTCATTAGT TGGGCTACGT CAAAAGACTA CTCTGCCTTG
GTAGCAAAAG AAAAAGGCTG GGCTGCTGTA CCTCCAGGCA CACGCACCTC ATTGTATGAG
AACCCTAACT ACATGGAAGC TGCCCCTTTT GCTGAAATTA CTCTGGCCTC AATCGAATCG
GTTGACCCGA AAAACCCTAC GGTCAAGCCC GTACCTTATG TAGGTGTGCA GTTTGTCGCC
ATCCCGGAGT TTCAAGGTAT AGGCACCGCA GTTGGTCAGC AATTTTCTGC CGCATTGGCA
GGCAAGATGA CAGTTGATCA AGCGCTGGCT AACGCTCAAC GACTCGTTGA ACGCGCCATG
CGCAAGGCTC GCTACCCAAA ATAG
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| Protein sequence | MLKKITKTTC AALSMSAALS TSTALFMASA VNAETITIAT VNNGDMITMK ELSSDFEAKH
PDIDLKWVTL EENILRQRVT TDVATKGGQY DVMTIGTYEV PIWGKQGWLT ELDGLGPNYD
EEDLLPAIRS GLSLNNKLYA APFYGESSMV MYRKDLLEKA GLEMPTKPSW KFIRQAAKAM
TDGDSGVYGI CLRGKAGWGE NTALITAMSN SFGARWFDEN WKPQFNTQEW KDTLQYYVDV
MEESGPPGAS SNGFNENLAL FQTGKCGMWI DATVAGAFVT NKKDSEVADK VGFAMAPDMD
LGKRGNWLWA WTLAVPSSSK KADAAQKFIS WATSKDYSAL VAKEKGWAAV PPGTRTSLYE
NPNYMEAAPF AEITLASIES VDPKNPTVKP VPYVGVQFVA IPEFQGIGTA VGQQFSAALA
GKMTVDQALA NAQRLVERAM RKARYPK
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