| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4074 |
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| Symbol | dapF |
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| ID | 4175863 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4898586 |
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| End bp | 4899416 |
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| Gene Length | 831 bp |
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| Protein Length | 276 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638057110 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_663627 |
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| Protein GI | 109900372 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase
[TIGR00654] phenazine biosynthesis protein PhzF family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGTTC AGTTTTCAAA GATGCACGGT TTAGGCAATG ACTTTGTCGT TATTGACAAC
GTAACCCAAA ACGTTTTTTT CAGTAAAGAA AAGATTTCCC AGTTGGCGGA TCGCAATTTC
GGTATCGGCT TCGACCAATT ATTGGTCGTA GAGCCTCCGT ACGACCCGGA ACAAGACTTT
CATTATCGTA TTTTTAACTC AGACGGCTCT GAGGTTTCCC AGTGCGGCAA CGGTGCTCGT
TGTTTCGCTC GCTTTGTTAA GATGAAAGGC CTAACCAACC GCAACAAAAT CGTGGTAAGC
ACCAAGGCTG GTCGTATCGT GTTATATCAT GAGCGTGACG GGCAAATTAC CGTCAACATG
GGCGAGCCTA TATTTGAACC GGCTAAAATC CCGTTAAAGG CCAACAAGCA AGAAAACATT
TATATCATCC GCGAGAATGA CCACACCTTC TTTTGCGGCG CAGTTTCCAT GGGTAACCCC
CATTGTGTAT TATTAGTGGA TGATGTTGAA ACAGCTGATG TAGAAGGCAT AGGTAAAACG
TTAGTTGCCC ACGAACGCTT TCCTGAGGGT GCCAACATCG GCTTTATGCA GATTTTAAAC
AGCGGTCATA TTAAACTTCG TGTTTATGAG CGCGGCGTGG GTGAAACCCT CGCATGTGGT
AGCGGCGCGT GTGCAGCCGT CGCCGTAGGG CAAATGCAGA AAAAGTTAAA CAAGGAAGTC
ACTGTCGATT TACCAGGTGG TACCTTGAAA ATTCGTTGGC AAGGGCCAGG GTCAATCTTA
AAAATGACAG GGACAGCGGA ACATGTCTTT GATGGAAATA TCACGTTATG A
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| Protein sequence | MQVQFSKMHG LGNDFVVIDN VTQNVFFSKE KISQLADRNF GIGFDQLLVV EPPYDPEQDF
HYRIFNSDGS EVSQCGNGAR CFARFVKMKG LTNRNKIVVS TKAGRIVLYH ERDGQITVNM
GEPIFEPAKI PLKANKQENI YIIRENDHTF FCGAVSMGNP HCVLLVDDVE TADVEGIGKT
LVAHERFPEG ANIGFMQILN SGHIKLRVYE RGVGETLACG SGACAAVAVG QMQKKLNKEV
TVDLPGGTLK IRWQGPGSIL KMTGTAEHVF DGNITL
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