| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4001 |
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| Symbol | |
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| ID | 4175785 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4816432 |
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| End bp | 4817010 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638057033 |
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| Product | polysaccharide export protein |
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| Protein accession | YP_663555 |
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| Protein GI | 109900300 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGGTTCT ATGGTCGATA CAATCAAGAT GTGCTCATTA TCTCACTGCT AAGGCCTAGA
TTTTTGCGAA TACGTATTTT ATTCATAATC ATGCTGTGTA TCTCAACGCT CTCGCAGGCT
CAGGAAAGTA CGTTTTTCAT GGGCACTGGA GACGTTATCG TGATTAATAT TTATGGTGAG
CCAGATCTGA ATCAACGTGT GCGCATTGAT AAAACGGGTG ACATACGTAT GCCTTTTATC
GGAATGGTAA ATGCCATCGG TAAAACCGCC AGTCAACTCG CCGCTGAAAT AGAGGCTGCC
TACCTCGATG GTTACCTTGT TGAGCCAAAT GTGAATGTGG TAATCGAGCG TTTTCGCCCT
TTCTTTATCA AAGGAGCGGT AAAAAACGTG GGTGCTTACG ATTTTCAGTT TGACCTCAGT
ATTGATGAAG CAATTGCTGT TGCGGGTGGC CTTAAAGAGC GAGCGTCTAA AAGTAAATGG
TTCATTATCC GCGGCGCAGA TAAAAAACGT ATCCCCATAC AAGCAGAGCA AATGGTGCAC
CCAGGTGACA TTATTATTAT CGAAGAAAGC CTATTTTAA
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| Protein sequence | MRFYGRYNQD VLIISLLRPR FLRIRILFII MLCISTLSQA QESTFFMGTG DVIVINIYGE
PDLNQRVRID KTGDIRMPFI GMVNAIGKTA SQLAAEIEAA YLDGYLVEPN VNVVIERFRP
FFIKGAVKNV GAYDFQFDLS IDEAIAVAGG LKERASKSKW FIIRGADKKR IPIQAEQMVH
PGDIIIIEES LF
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