Gene Patl_3980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3980 
Symbol 
ID4175760 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp4791711 
End bp4792859 
Gene Length1149 bp 
Protein Length382 aa 
Translation table11 
GC content47% 
IMG OID638057008 
ProductHflK protein 
Protein accessionYP_663534 
Protein GI109900279 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0330] Membrane protease subunits, stomatin/prohibitin homologs 
TIGRFAM ID[TIGR01933] HflK protein 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.758687 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTTGGA ATGAGCCCGG TGGTAACAAT AACGATCCGT GGAAGAACCG CGGTGGTCGC 
GATCAAGGTC CACCTGATTT AGACGAAGTA TTTAAAAATA TTTTAAATAA ATTCGGAAAG
TTCGGTGGTG GCAAAGGCGG CTCTTCTGAC GGCAAAGGCT TCGGTTTGGG TCTTGGTTTG
GTTGTTGGCC TCTTAGTTAT CGTTTGGTTC ATCAGTGGTT TTTACACCAT ACGTGAAGCT
GAGCGCGGTG TGGTATTGCG TTTCGGTGAG TTCAGCCACT TTGTTGAGCC TGGTCTACGC
TGGAAACCGA CGTTCGTTGA TAGTGTGTTA CCCGTTGACG TGCAAACGGT ACGTTCACTG
CCTTCTTCTG GCTCTATGCT GACCGAAGAT GAAAACGTGG TGCGGGTAGA GATGGAAGTA
CAATATCGAA TTCTTGAACC GTATAAGTAC AGCTTCTCGG TGACTAGCCC AGAAACAAGC
TTGAGCCAAG CGTTTGACAG TGCCATTCGC TACGTAGTGG GTCATTCAAA AATGGATGAC
ATCCTCACCA GCGGCCGTGA AGTGGCACGT CAAAATGTAC GTGACGAACT TCAAGCAATT
TTAGAACCCT ACGATATGGG GATCTCAATA GTTGATATGA ACTTTAAAGA TGCCCGCCCT
CCAGAAGAGG TGAAAGCCGC ATTTGATGAC GCTATTGCCG CCCAAGAAGA TGAGCAACGC
TTTATCAATG AAGCAGAAGC TTATTCTCGT GAAATCGAGC CTCGTGCTCG TGGTCAAGTC
AATCGTATGG CTGAAGAAGC GCAAGCATAT AAAGAGCAAT CTATCCTGCA GGCGCAAGGT
GAAGTTGCAC GTTTCGAAGA GTTGCTTCCT CAATATAAAG CAGCCCCTGA AGTGACGCGT
AGCCGTATTT ACTTGGAAAC ATTGGAAGAA GTGTACGCTA ACACCAGCAA AATCATGGTA
GACACCAAAG GTAGTGGCAA CATGCTTTAT CTACCGCTAG ACAAAATCCT GGAGAAACAA
GCCTCCAGCA CATCGCCATC AACAAACCGT AGAACGCTAG AAGGTTTACG TAATCAAGAT
CCAGTATCAA ATAGTGGCTC ACAAGATAAC GGCATTCGTA GTGGCAGTTC ACGTAGTGGG
AGAAACTAA
 
Protein sequence
MAWNEPGGNN NDPWKNRGGR DQGPPDLDEV FKNILNKFGK FGGGKGGSSD GKGFGLGLGL 
VVGLLVIVWF ISGFYTIREA ERGVVLRFGE FSHFVEPGLR WKPTFVDSVL PVDVQTVRSL
PSSGSMLTED ENVVRVEMEV QYRILEPYKY SFSVTSPETS LSQAFDSAIR YVVGHSKMDD
ILTSGREVAR QNVRDELQAI LEPYDMGISI VDMNFKDARP PEEVKAAFDD AIAAQEDEQR
FINEAEAYSR EIEPRARGQV NRMAEEAQAY KEQSILQAQG EVARFEELLP QYKAAPEVTR
SRIYLETLEE VYANTSKIMV DTKGSGNMLY LPLDKILEKQ ASSTSPSTNR RTLEGLRNQD
PVSNSGSQDN GIRSGSSRSG RN