| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3935 |
|---|
| Symbol | |
|---|
| ID | 4175715 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4746362 |
|---|
| End bp | 4747609 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638056963 |
|---|
| Product | poly(A) polymerase |
|---|
| Protein accession | YP_663489 |
|---|
| Protein GI | 109900234 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0617] tRNA nucleotidyltransferase/poly(A) polymerase |
|---|
| TIGRFAM ID | [TIGR01942] poly(A) polymerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000967164 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCTGTACC GTCTGCATAA TAACGGTTAT CAAGCTTTTT TAGTTGGCGG CTGTGTGCGC
GATATTCTAT TGGGTAAAAA ACCCAAAGAT TTTGACGTCA CTACAGACGC GACCCCTGAA
CAGGTCAAAG AATTGTTCAG AAACTGCCGC CTAATTGGCC GTCGGTTTCG TTTAGCGCAC
GTGGTGTTTG GTCGAGAAGT TATCGAAGTT GCCACTTTTC GTGGTCATCA CCCTGTTGAA
GACGAAAATG CCAAAGAGCA GAATTTGAGC AAGCAAAGCG ATCATGGACA GTTACTTCGT
GACAACGTGT TTGGCAGCAT AGAAGAAGAC GCAGAGCGTC GTGACTTCAC CGTTAATGCG
ATGTATTACA ACATCGCTGA TTACAGTATT CATGATTTTG CCAACGGCAT GGAAGCGGTT
AAAAAGCGTC AAATCACTAT GATTGGCGAC CCTGCTACTC GTTACCGTGA AGATCCGGTG
CGTATGTTAC GTGCGGTGCG TTTTGCTGTG AAATTGGGTA TGAAAATAAG CCCTGAAACC
GCCAAGCCGA TGTACGAACT CGCTCCATTA ATGGCGAATA TTCCTCCAGC GCGTTTGTTT
GAAGAAGTAC TAAAGCTACT GTTATCGGGC CAAGGACTAG AAACCTACAA GTTACTCAAT
GAATTCGGTT TATTTGAACA GTTGTTTCCT CAGCTCACCC CTTTGCTAAA ATCGCAAAAT
AGTCGTGAAC TTGCGTTTAT TGAGCAAGTG CTGATGAATA CGGATAACCG TATTAACTCG
GATATGAAAG TGACCCCAGC GTTCATTTTT GCAGCCTTGT TATGGTACCC ATTAGAAGAG
CGTTGTCAGC AACATATGGT GGAAGGTGGC CTAAACCACT TTGACGCGTT TAATTTAGCC
TTGAGTGATG TTCTGCACCG TCAAATTCAA CGCATTATGA TCCCCAAACG TTTTACCATC
ACAGTGCGCG AGATTTGGCA GTTGCAACAA CGTCTTCCTA AGCGATACGG ACGCAGAGCG
TTTCAAATGC TTGAACACCC TAAATTTAGG GCTGCCTATG ATTTCTTGCT TATTCGTGGG
CAGATCGAAG GCGGTGAGCT ACTCACGTTA GCTCAGTGGT GGACAGATTT TCAAAACGTT
AACCCTGAGC AGCGCCAAGG GATGTTAAAA ACGCTACGCG AGAAAGAAGG CGGCGGTGCA
CCTAAGCGCA GAAGCCGCTA CAGAGGCAAG AAGAAAGCCG CCCAATGA
|
|---|
| Protein sequence | MLYRLHNNGY QAFLVGGCVR DILLGKKPKD FDVTTDATPE QVKELFRNCR LIGRRFRLAH
VVFGREVIEV ATFRGHHPVE DENAKEQNLS KQSDHGQLLR DNVFGSIEED AERRDFTVNA
MYYNIADYSI HDFANGMEAV KKRQITMIGD PATRYREDPV RMLRAVRFAV KLGMKISPET
AKPMYELAPL MANIPPARLF EEVLKLLLSG QGLETYKLLN EFGLFEQLFP QLTPLLKSQN
SRELAFIEQV LMNTDNRINS DMKVTPAFIF AALLWYPLEE RCQQHMVEGG LNHFDAFNLA
LSDVLHRQIQ RIMIPKRFTI TVREIWQLQQ RLPKRYGRRA FQMLEHPKFR AAYDFLLIRG
QIEGGELLTL AQWWTDFQNV NPEQRQGMLK TLREKEGGGA PKRRSRYRGK KKAAQ
|
|---|
| |