Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3923 |
Symbol | |
ID | 4175703 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 4735184 |
End bp | 4735900 |
Gene Length | 717 bp |
Protein Length | 238 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638056951 |
Product | sortase family protein |
Protein accession | YP_663477 |
Protein GI | 109900222 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3764] Sortase (surface protein transpeptidase) |
TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTTCAG GCGCTGAACT AGGCACCAAC GTGCGCGATA ACGAGGCAAA GTGGGCTGTG TGGTTTAGCC GAGATAGTCT AAAAAGTGCT CTGTTAGGCG CGATCTGGCT CACATGCTTA GTTGGCGGCG GGCTATTGGT TTCAAACGGT GCGTACATGT GGGCGAAGGC ACAATTTGCG CAAGTGCTTA TCGCCAGCGC TTGGCAACGC AGCATGCATG CAGCCGAAGT TAACATCCCT TCCCATAGCG CTAATCAAAC ACTCGAAGCG CAAGCCATAA AAACCAAACC TTGGCCATGG GCTGATACCT ACCCTGTGGC CAAACTAACG TTACCGAGTA AGTCATTAGG CTCGTTATCG GGAGAGCCCT TATACGTTTT AGCAGGGGCA TCAGGGCGTA CAATGGCATT TGGGCCTGGG CATATGAGTG CGACTCCACT CCCATTTGAA GGCGGCAATA GTGTCATCAC GGGTCACAGA GATACTCACT TCGCCGCCCT GCAATACCTG AACAAGGGAG ATTCCATAGA CGTGCAAACT CTCGAAGCGC AAGGGCAGTA CCGTGTCACA TCGACCTTCA TTGTGCATCA AAGCCAAACT CACATCATCG AGTCACAAGG CGCAGATCAA CTCACATTAA TCACCTGCTA CCCGTTTAAC GCAATGACAC CCAACCCGAC GATACGCTAT GTGGTCAGTG CTGAACGCGT GCGATAA
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Protein sequence | MISGAELGTN VRDNEAKWAV WFSRDSLKSA LLGAIWLTCL VGGGLLVSNG AYMWAKAQFA QVLIASAWQR SMHAAEVNIP SHSANQTLEA QAIKTKPWPW ADTYPVAKLT LPSKSLGSLS GEPLYVLAGA SGRTMAFGPG HMSATPLPFE GGNSVITGHR DTHFAALQYL NKGDSIDVQT LEAQGQYRVT STFIVHQSQT HIIESQGADQ LTLITCYPFN AMTPNPTIRY VVSAERVR
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