| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3914 |
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| Symbol | |
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| ID | 4175694 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4720203 |
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| End bp | 4722959 |
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| Gene Length | 2757 bp |
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| Protein Length | 918 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638056942 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_663468 |
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| Protein GI | 109900213 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.161625 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATGTAA TGCAATTCTG TCGAGTTTTA CGTCTTGTTC TATGGAGTTG GTTTTTTGGT
TCAGCTTGTT ATGGTCAAGA ACAAGAAATG AACGTGTTAG TTATTCATTC TTACGATGAG
CAGCATGAAT GGACCAAAGC CTTAACCGAA GGTCTCGAAA CGGGTGTTTT AAATGCTCCT
GGAGTACGGA TATTACACGA ACACCTTGAT GCAAAGCGCT TTCCGACACT GTTTTTTAAG
GACGTGTTTT TAGATTACCT AGCAAATAAA TATCAGACTA CCCAATTTAG CGCAATCGTC
ACTACAGACG ACGACGCGCT GCAGTTTATA CTCGCAACAC ACGATTTACA TTTTCACGAT
GTGCCGGTTG TTTTTGTTGG CGTGAATAAA CATCTAGAAA AAAACACCTA TACATCATGG
TTAACTGGGG TGTACGAATA TCGTGATATT GAAGGGTTAC TGCGATTAAT CCGTCTTCAA
AGTAAAAGCG ATGAGTTAAT TGTTCTTACC GATAGTACTC GTTCAGGTAC AGCGAACTTA
AGTAAAGTAA AAAGGTATTC CGAGTTTACG AAGTTACATG TTTTAACGGA TGTACACGCC
GAAAGTGTCA AAGAGGCCTT CGAGCCGTTT GCTACCGACA CGCCTATCTT GGTTGTTGGT
CAGTTGTTTT ATCCACACTT GCAAGCGTAT GCAGGTTGGA TTGAAAGCGC TGATTTACTC
ACGGAAAACA GCGCTAACCC CTATTATTCC ATCGCATCTA TTACGATTGA TCATGGAATA
TTAGGGGTTC GTTATTTAGA TGGATTTGTT CACGCTCAGC AGGCAGCAAA AATGGTTGCT
CGTATTTTAT CTGGTACCCC GGTGTCTGAT ATCCCCAAAA TTGTAAAAGC GGAGAACCTT
TGGATATTCG ATGCTCAACT ACTAGAGCGT TATCAATTTG CGCGCTCTGA ATTACCACAA
GGCAGTATTT TGCGTAATGA GCAACTGTCT TTTTATGAGC AATACAAGTT AATTGTGTGG
GGCGTGGTGA GTGCGTTTTT TGTCGCCCTA GTGATCATTT TACTACTCGT GGCTGTTATC
AGGCGAAACG CTCTGGTGAA GAGGGAAACA GAGTTAAATG CCTCTAGATA CAGAGATCTT
GCCGACGCGG GCGCAAGCAT ATTCTGGGAG TGTGATTCTG ACCTTAATTA TACTCACCTC
AGTGGCGATG TTGCCTCTTT GTTTGATTAC AAACCTGAAG AATTAATTGG GCTCCCTCAT
TTAGAAATCC TTAAAAACAT TGATATTACT GATTTCCCCA CCGTGCGTTA TAAACAGAGG
ATCAGTCGAA AAGAGTCATT GAGTAACTTC ATTCTTAAAG CGAAAAAGCA TACAGGTGAG
CAACTTGTTT TGCTCATTAA TGCCAAGCCC ATAATGGAAT TTGAAAACAA GTTCCTAGGT
TATCGGGGTA TTTTAAAAGA CATCACCAAG GAACATGATT TATCACAAAT GGTGAGCTAT
CAAGCTAATT ACGACGCACT TACTGGCTTA GTGAATCGCC GTCATTTCGT AAGTTTGCTT
AAGCGATATT TCGCAGAAAA AAACAACAAT GTAGCGCCTT CTTATTTATG TTGTATTGAT
GTTGATAACT TTAAATTAGT GAATGATAGT TTAGGACACC AAATTGGCGA TGGCGTATTA
ACAGAGGTTG CCGAGGTGTT GAGTCACCTA GTTAATTCTA ACGACACGTT AGGGCGTTTG
GGGGGAGACG AATTTGCACT GCTATTAGTG GATAGGTCGT TGGAAGAATC TACAAGTTTG
TGCAAAAACC TGATTCAAAG TGTGTCTGAG CACGCCTTTT ATTGGGGGGG GCGGCAAATT
AATATCGGAA TTAGTATCGG TATGGTCACT TTAGAGCGGG ACTTAAGTGA TGTCGAGCTA
TTGAGCAAGG CGGGGTTATC TCGCGATAAA GCAAAAGAAT TAGGCCGTGG TCGTTTGTTT
TTTGCCGAGG CAGGGTGCAC TGATATGCTA AGAGATCAAG CGCATATAGG GTATATAGCA
AATATATCTC ATGATCTTAA GCTGGGCCGC TTTAGCTTGG TGAAACAGCC CATTGTTGGC
CTGAAAAATA CAAATCAACA CATATTGCAC TATGAAATTC TTATTCGATA TCATAATGAA
AATGGGCAGT TTGTATCTCC CGGAGTATTC ATTCCGGTTG CTGAAAAGCA CGGCGTTATC
AGCTTAATCG ATAGCTGGGT CGTTAAAACG ACTTTGGCGA ATTATGCGAC CTATTTCCCT
GAAGGTAACG TGACGGTGTC GATCAATTTA TCGGGCGTGA GTGTGAGTAA CGATGACTTT
AGCCGTCAGG TTATCAACTT AATCAAGACA TCGAGAATAG CGCCACAAAA TATTTGTTTT
GAGATTACAG AGACTGCCGT TATTTCGCGG ATCGGCCAAG CTTTGGACTT TATCCATGAG
CTTAAAGCCA TAGGGGTTAA ATTTGCCTTA GATGATTTTG GAAGTGGCAC TTCATCTTTC
GGTTATTTGA AGCAGATACC GGTCGACTAT TTGAAAATTG ACGGAAGCTT AGTGAAGGAT
ATCCATAATC AACCAACAGA TCGCGCTATT GTGGAATCAG TGCATAACAT TGCTAAAATG
ATGGGAATGA AAACCGTTGC AGAATTTGTT GAGAATGATG AGATATGTCG GGTTCTGCAG
GATATAGGTA TTGATTATGG CCAAGGCTAC GGTTTAGGAA AGCCGCAAAG CTGTTAG
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| Protein sequence | MYVMQFCRVL RLVLWSWFFG SACYGQEQEM NVLVIHSYDE QHEWTKALTE GLETGVLNAP
GVRILHEHLD AKRFPTLFFK DVFLDYLANK YQTTQFSAIV TTDDDALQFI LATHDLHFHD
VPVVFVGVNK HLEKNTYTSW LTGVYEYRDI EGLLRLIRLQ SKSDELIVLT DSTRSGTANL
SKVKRYSEFT KLHVLTDVHA ESVKEAFEPF ATDTPILVVG QLFYPHLQAY AGWIESADLL
TENSANPYYS IASITIDHGI LGVRYLDGFV HAQQAAKMVA RILSGTPVSD IPKIVKAENL
WIFDAQLLER YQFARSELPQ GSILRNEQLS FYEQYKLIVW GVVSAFFVAL VIILLLVAVI
RRNALVKRET ELNASRYRDL ADAGASIFWE CDSDLNYTHL SGDVASLFDY KPEELIGLPH
LEILKNIDIT DFPTVRYKQR ISRKESLSNF ILKAKKHTGE QLVLLINAKP IMEFENKFLG
YRGILKDITK EHDLSQMVSY QANYDALTGL VNRRHFVSLL KRYFAEKNNN VAPSYLCCID
VDNFKLVNDS LGHQIGDGVL TEVAEVLSHL VNSNDTLGRL GGDEFALLLV DRSLEESTSL
CKNLIQSVSE HAFYWGGRQI NIGISIGMVT LERDLSDVEL LSKAGLSRDK AKELGRGRLF
FAEAGCTDML RDQAHIGYIA NISHDLKLGR FSLVKQPIVG LKNTNQHILH YEILIRYHNE
NGQFVSPGVF IPVAEKHGVI SLIDSWVVKT TLANYATYFP EGNVTVSINL SGVSVSNDDF
SRQVINLIKT SRIAPQNICF EITETAVISR IGQALDFIHE LKAIGVKFAL DDFGSGTSSF
GYLKQIPVDY LKIDGSLVKD IHNQPTDRAI VESVHNIAKM MGMKTVAEFV ENDEICRVLQ
DIGIDYGQGY GLGKPQSC
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