| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3904 |
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| Symbol | |
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| ID | 4175684 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4706736 |
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| End bp | 4709024 |
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| Gene Length | 2289 bp |
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| Protein Length | 762 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638056932 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_663458 |
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| Protein GI | 109900203 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.5243 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACACA CTCGAACATC ATTCTTAGCG CAGTCAATAA ACATGGTACT TTTCGCTAGT
GCATTGGGGG CGTCAACACA TCTCGTCGCC GCTGAAGAGG AGCAAGAAAG AAAAGGTATT
GAAGTCATTA ATATCACTGC CCAGAAGCGA GTCGAAAACT TACAGGAAGT TCCAATGTCA
ATGACCGCTT TCTCAGCAGA AGCGATCGAA AAAAATCAGT TAACCGATAT AGGTGATATT
GCTGCGGTAA CGCCGAATTT TAGCTTTTCT ACTACGGGAA GTGGCCGCCC AGAATTTACC
ATTCGCGGAA TTGGTACATC AGGTGTCGTG CGAGCTGGTT TGGATAACGC GGTCAATACC
TTTGTTGATG ATGTATACAT TTCGCGTTCA AGTTCTTCTA TTTTTGAATT ATTTGATTTG
GAGTCAATCT CTGTTTTACG AGGCCCGCAA GGCACGCTTT TTGGTAAAAA TGTAGTTGGT
GGAGCTATCA GCATTAACAC CAAGAAGCCG ACAGAAGACT TAGAAATGAA AATAAAGGGG
GGAGTTGGTA GCGAGGGCCT AAGAACAGTA CAAGCCTATA TAAATGGCGG ATTAACAGAT
GAGTTAGCCG GTAAATTAAC GGTTTCAACT AATCAACGCG ATGGTCTTGG ATATGATACT
GCATCAGGAC AAGAATTAGC TGACCGTGAT TCTAAAAGTG TTCGGGGACA ACTCTATTTT
GATAATGGTG ATTTCACGAC ATTATTTACC GCTGATTATT CTAGGGATAA AAACAACGGC
CAAATTATCA GCGAGAGAGG GTTAGGTAGC CTAGCAGCGA CCGATAATGA CAGGTTTACT
TCGTCCCATG GTATTCCTCA AAGCGTAGAT TCGAAGATAT ATGGCTTTTC ACTAAAAGCG
GAAACTGAAA TAGACAGCGG CCTAATCACG TCTGTTAGTG CTATTCGAAA AAACTCGCTG
GCAACAGTTG AGTCATTTAC TGCAGAGCAA TTAAATGTCG ACAATGGTAA TCGCACTGGC
ACGCAAAAAA TACCTGGCCT TGCGGACATA TTTGATAACA GCGAAAGTTC CACTCAAATC
ACACAAGAGT TTCGCTTTAC CTCTAACACC GATACTGATT TAGCTTGGGT GTCAGGAGTC
TTTTTCATTA AAGAGGAAAT TAATCGTATT GAGTGTGAAG AAGTTTATGT CAACGGCACA
CAACCCGTTT TCATAGGAGG CGGGGCTGCT GGCAAATCTC GTCCTTGTTG GGATAACACA
AATGATACCA CTGGTTTAGC TTTTTTCTGG GATGGTAGTT ACGATCTAAC AGATAGTGTA
AAGATTCGAG TGGGTGCACG ATATACGCAA GAAGAGAAAG AAAATTATAT TGAGGCGACA
TACAACGAAA CATTACTTGA TCAATATGTC CCTGGTGCGG AGAACTTGCC TGACGCACAG
TTAACCTTTC CTTTATCTGA GGCTTATACT GCTAAAGCCA ATAAATCATT TAGTGGTTTC
ACGCCACGCT TCGTCATTGA ATGGACCCCA TCTGATGATT TATTGACATA CTTTAACGTT
TCTAAAGGAT TCAAATCTGG CGGATTTGAC GGAAAAGTAA ACAGTAATAA CCTAACTGCA
GAAGGTATTG GTAAAGCAGA AAGGCCTTTT GATGAAGAGA CCGCTATTAA CTATGAACTC
GGTCTTAAAT CTCAATGGTT TGATGACAGG TTGAGAGTCA ATACCGCATT GTTTCAAAGT
AATTTTGACG ATATGCAGCG CTTGATCATT GTTCCTGCAG GTGGTCTAGC AGTCGTGAAT
GCTGCCAGTG CGACCTCAAA GGGGCTTGAA CTAGATGGGG TGGCGTTACT GACAGATGAT
TGGGAGTTGA ATTTTGGATA TGGGTTTTTA AGAGCAACTT TTGATGAATT CGTTATCAAT
GCTAATGACG ATCGTAGCGG GCAAGTATTA CCCAATGCTC CTAAACATAA GTTTAATTTA
GGTTCTACCT ATACTCATAC CCTTGAAAAT GATGGGACTG TTACTTTCTA TGCGTCTTAC
GGTTTTACGG CTAGCCAGCA TTTTAATCGC GCCCCCATCG CTAACTTAGA AACTCAAGGT
GCGTACAACG TTTACAACGC CAATATTTCG TATACCACAC CAGATGAAAA TTGGAAATTT
ACTCTGTGGG GCAAGAACAT TACTGATACG GAGTACAGTA ATAAGTTGGG GCAATTTATT
GAGAGTACTA AAGAAAACCC AGCAGACCCT GCAACATATG GTATTTCAGT GACATACAAT
TACTTTTAG
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| Protein sequence | MTHTRTSFLA QSINMVLFAS ALGASTHLVA AEEEQERKGI EVINITAQKR VENLQEVPMS
MTAFSAEAIE KNQLTDIGDI AAVTPNFSFS TTGSGRPEFT IRGIGTSGVV RAGLDNAVNT
FVDDVYISRS SSSIFELFDL ESISVLRGPQ GTLFGKNVVG GAISINTKKP TEDLEMKIKG
GVGSEGLRTV QAYINGGLTD ELAGKLTVST NQRDGLGYDT ASGQELADRD SKSVRGQLYF
DNGDFTTLFT ADYSRDKNNG QIISERGLGS LAATDNDRFT SSHGIPQSVD SKIYGFSLKA
ETEIDSGLIT SVSAIRKNSL ATVESFTAEQ LNVDNGNRTG TQKIPGLADI FDNSESSTQI
TQEFRFTSNT DTDLAWVSGV FFIKEEINRI ECEEVYVNGT QPVFIGGGAA GKSRPCWDNT
NDTTGLAFFW DGSYDLTDSV KIRVGARYTQ EEKENYIEAT YNETLLDQYV PGAENLPDAQ
LTFPLSEAYT AKANKSFSGF TPRFVIEWTP SDDLLTYFNV SKGFKSGGFD GKVNSNNLTA
EGIGKAERPF DEETAINYEL GLKSQWFDDR LRVNTALFQS NFDDMQRLII VPAGGLAVVN
AASATSKGLE LDGVALLTDD WELNFGYGFL RATFDEFVIN ANDDRSGQVL PNAPKHKFNL
GSTYTHTLEN DGTVTFYASY GFTASQHFNR APIANLETQG AYNVYNANIS YTTPDENWKF
TLWGKNITDT EYSNKLGQFI ESTKENPADP ATYGISVTYN YF
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