| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3901 |
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| Symbol | |
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| ID | 4175681 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4700925 |
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| End bp | 4703318 |
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| Gene Length | 2394 bp |
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| Protein Length | 797 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638056929 |
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| Product | TonB-dependent receptor, plug |
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| Protein accession | YP_663455 |
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| Protein GI | 109900200 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCACC ATAAAAAATT TATTAAAACC ACATTATCCG CAGCAATTAT GCTGGCCTTA
CCTATTACAG GTTTGGCAGA AGTAGAGAAA ATTGTTGTTA CTGCACAAAA GCGCAGTGAA
CCATTGCAAG ATGTGCCGGT TGCCATAACT GCTTTTACTG GCGCAACGAT GGAAGCGTTA
GGCATTACCG ATGCCAGTGA TTTAGTGGCT GTGACGCCAG GGTTAACCTC ATCAGCACAG
GGTGGTTCAA ATAGAAATTA TTTTTTACGC GGTATCGGCA CCGGTGATTT TCATCTTACG
GCCTCTCCTG CCGTCGGCCA ATATTATGAT GGCATTACCT TAACAAGTGG GTTCCAAGCA
CGTGCGGCGT TATTTGATAT GCAGCGCGTA GAAGTTCTAA AAGGCCCACA AAACACCTTG
TTTGGTCTCA ATACGACCGG TGGGGCCATA AACTATATTA CTAACAAGCC TGAAATTGAT
GGTGGTACAA ATGGGAGCGT TAAAGTAAAG ATCGGCAGTG ACTCATTGAT TAATACTGAG
TCAGCAATTG GTTTTGATAT TAGCGATTCG GTAGCTGCGC GGCTGGCCGT GATGACGAAC
AAAAATGATG GCCCATTTAC ATCACTAAGC GATGGTCGCG ATTATGGTGA CGATGACATG
AAAGCTGTCC GCCTTGGCGT GCTTTGGGCA CCAGTTGATG ACGCAAGCCT ACTATTTAAC
GTAAACACGA TGCAGAGTGA GAACAACTCT ACTGCATCTG AATTGTTAGG TAGCAGAGCA
CCAGATGGCT CTGGTGACGT GTGCGCCGAA TTCAACCGTG GCAATTTAGA CTTTGAGCGC
AATACCGACT GTGTAGGGCG CGACGGTGGT GCCACAGGGG AACAACCGAC GGATCCATCA
ACTGGCAGTT GGGATACCAT ATCCACTAAC TTCGGATTAG AAGATATCAA AACGAAAGGG
TACTATCTCG CCTTTGACTA CGATTTTGAT ATCGGCACCC TCAGTTTGAT AAGTTCATTT
GATAACTTAG ATTTTAAAGT GGCCACAGAT GTCGATGGCA GTGCAACTTT AGGTGCCCAT
TTAACGCAAG AGGATGACCG CGATACTTAT CAACATGAGC TTCGCTTCGT CTCTGACGGT
TTAGATGCGT TCAGATGGAT AGCAGGTATT TACTATCTTG ATCAGGATGC AGAGTCATTT
ACTGGAATTC GCTCTCCTGG GATCGGAGGT GGTAATATAA TACCAAATGT ACAGCTGGCT
CATAGCAAAG AAAACTTGGG GATCTATACC CAAGCCGAGT ACGACTTAAC CGACGATATA
ACCATCACCT CAGGCCTTCG CTGGTCAGAC GAAAAAATAG TCGCAGACTA TTTACCTTCA
TCACCTAACG CTCAAACTTT TGACAATAAA ATACCTTTAT TTTCAAACGA TATCGATGAG
TTGGTCCGCT TACAAAACAA TGTTGAAAAC CCTAACCTTG ATGTAGATGG TTATGATATA
CGGCGTCAAG TTCGTCAGAA TCTATCAAAC GAAGACATTG GATACACGGT TAAGCTCGAT
TGGAAAGCCA CTGAAGACGC ATTACTCTAC GCCAGTTTAT CAAAGGGATT CAAAGGCGGC
GCGGCTGATA TTCGCACAGC ATATGCATTA GTGCCGCCAG CCAATATATT GACCGGCTTA
GAAGATGCTC GCCTTGAACC TGAATCACTT AAAGCATGGG AGGTTGGTTA CAAGAGTTCG
TTCCTAAAAA ATAGCATTCA ACTCGATGCC GCTGTTTTTT ACTACACCTA CTTTAACAAA
CAACAGTTTG TGACGGCCGG CGGTATACCT ACGTTAGCAA ACGCTCCTCA ATCTGAAATT
AAAGGTTTAG ATGCCAACGT AAAATACGCA AACGACTACG GCCTTTTTCT AGATTTTGGT
TTAGCACTAA TTGATTCTGA AATAACTGAC GCTGGCGAAG ACGAGCTATT TATTGAAGGA
ACCGAGTTGG GGAACACCCC GAAATATTCA CTTTCGATGG TCGCTAAACA AGAAATCGAA
TTTCAGAACG GAACACTACT CACGCTGATG GGAAATGTGA ATTACACGGA CGATGAGACC
AAAGGCTCAA TTACCCGCGG CAGCAGTGAA CTCAAGGACT TGATCACCCA AGAAGCATTT
ACGTTGGTGA ACATGAATGT GAAATACAGT TTTGGCGATG ACTTGCAATA TGCAGTGTCT
CTTTACGGCA ATAATCTAAC TGATGAGCAC TTCTGTGCAA GCCTAGGCAC GTCAGACGGA
AACAAAATAT ATGCAGATGG TATTTCTCCG GGCTCCCTAG GATATAACGT GAGATGTGTT
GTAACGCGTG CGAGCACACG AACTTTTGGC TTGTCTTTCG GTTTAACCTT TTAA
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| Protein sequence | MKHHKKFIKT TLSAAIMLAL PITGLAEVEK IVVTAQKRSE PLQDVPVAIT AFTGATMEAL
GITDASDLVA VTPGLTSSAQ GGSNRNYFLR GIGTGDFHLT ASPAVGQYYD GITLTSGFQA
RAALFDMQRV EVLKGPQNTL FGLNTTGGAI NYITNKPEID GGTNGSVKVK IGSDSLINTE
SAIGFDISDS VAARLAVMTN KNDGPFTSLS DGRDYGDDDM KAVRLGVLWA PVDDASLLFN
VNTMQSENNS TASELLGSRA PDGSGDVCAE FNRGNLDFER NTDCVGRDGG ATGEQPTDPS
TGSWDTISTN FGLEDIKTKG YYLAFDYDFD IGTLSLISSF DNLDFKVATD VDGSATLGAH
LTQEDDRDTY QHELRFVSDG LDAFRWIAGI YYLDQDAESF TGIRSPGIGG GNIIPNVQLA
HSKENLGIYT QAEYDLTDDI TITSGLRWSD EKIVADYLPS SPNAQTFDNK IPLFSNDIDE
LVRLQNNVEN PNLDVDGYDI RRQVRQNLSN EDIGYTVKLD WKATEDALLY ASLSKGFKGG
AADIRTAYAL VPPANILTGL EDARLEPESL KAWEVGYKSS FLKNSIQLDA AVFYYTYFNK
QQFVTAGGIP TLANAPQSEI KGLDANVKYA NDYGLFLDFG LALIDSEITD AGEDELFIEG
TELGNTPKYS LSMVAKQEIE FQNGTLLTLM GNVNYTDDET KGSITRGSSE LKDLITQEAF
TLVNMNVKYS FGDDLQYAVS LYGNNLTDEH FCASLGTSDG NKIYADGISP GSLGYNVRCV
VTRASTRTFG LSFGLTF
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