| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3890 |
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| Symbol | |
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| ID | 4175670 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4686814 |
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| End bp | 4687500 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056918 |
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| Product | hypothetical protein |
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| Protein accession | YP_663444 |
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| Protein GI | 109900189 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0684] Demethylmenaquinone methyltransferase |
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| TIGRFAM ID | [TIGR02798] 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCAATCT GTGTAACTGA TACTCCTCGT CCTGATAAAG CTCTCGTGGC TAAATACCAA
GGGTTTGAAG TCGCCACCGT GCATGAAGCA CAAGGTCGTA AAGGTTTACT TGCTGACTAT
ATGCGTCCGA TTTACAAACC CGCTAAAGTA GCAGGCCCAG CAGTGACTTG CGAAGTGGCG
CCAGGAGACA ATTGGATGAT CCATGTTGCG GTTGAACAAT GTCAACCGGG TGACGTGTTA
GTGGTCAAGC CGACAAGTCC AAGTGTGGAT GGTTTTTTTG GTGATTTACT GGCTACTTCT
CTTAAAGCGC GCGGTGTACT CGGGCTGATC ATTGAAGGAG GAGTACGTGA TACCGCTACC
TTAACGGCAA TGAATTTTCC GGTGTGGTCA AAATCGATAT TCTCACAAGG TTGTGTAAAA
GAAACCATTG CCAACGTTAA CGTACCCGTC ATGTGTGCAG GTGCTTATAT TCGTCCAGGT
GACATGATAG TGGCAGACGA AGACGGTGTT GTGGTCGTAG CGCTTGAAGA AGCTGATAAT
GTGCAAACCA AAGTAGAGCA ACGCATGGAA AATGAAGAAT CTAAGCGTGT CCGTTTTGAA
AACGGCGAGC TAGGGCTTGA TATTTACAAT ATGCGTGAGC GACTTGCAGC TAAAGGCTTG
GTTTACGTTA AGTACAACGA GCAATAA
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| Protein sequence | MAICVTDTPR PDKALVAKYQ GFEVATVHEA QGRKGLLADY MRPIYKPAKV AGPAVTCEVA
PGDNWMIHVA VEQCQPGDVL VVKPTSPSVD GFFGDLLATS LKARGVLGLI IEGGVRDTAT
LTAMNFPVWS KSIFSQGCVK ETIANVNVPV MCAGAYIRPG DMIVADEDGV VVVALEEADN
VQTKVEQRME NEESKRVRFE NGELGLDIYN MRERLAAKGL VYVKYNEQ
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