| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3857 |
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| Symbol | |
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| ID | 4175637 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4653214 |
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| End bp | 4653909 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638056885 |
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| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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| Protein accession | YP_663411 |
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| Protein GI | 109900156 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
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| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0300155 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCAACTG CTCCCCTGTA CACCGTTGTT GTGCCCGCTG CAGGAATAGG TCAACGTATG
CAAGCCGACA GGCCCAAACA ATATTTGACC ATAGCCGGTA AGACCATTTT GGAGCACACC
CTAGAGAACC TGTACGCTCA CCCTCAAATT GAACAAATCA TTGTCGCGAT AAACCCATTA
GATCAATACT TTGACAGCTT GCCCATTGCT AGCAAAACCT GGGTAAAGCG GGTTGATGGT
GGCGGTGAAC GCGCAGACTC AGTTTTAGCA GGCCTAAACA GCCTTCAAAA CGCTGATTGG
GTACTCGTGC ATGATGCCGC GCGCCCTTGC CTCGCCCAAG ACGACTTAAG CAAACTTTTG
GCCACAGCCG AGCATTCAGA GCATGGCGCG ATCCTCGCCT GCCGAGTGCG AGACACGATG
AAACGCGGAA ATTCGTCGCA CGATATATTG CACACTGAGA GCCGTGACAA TCTATGGCAC
GCTTTAACAC CGCAGTTTTT TCCTTTAGAT GCGCTGCGTA GCGCTTTGGG TCAAGCAATG
GCTCAAGGCA TAGAAATTAC CGATGAAGCC TCTGCCATAG AATGGGTGCA AGGTAAGGTA
CATTTAGTTG AAGGGCGAAG CAGTAACATT AAAGTTACCC AACCAGAGGA CTTACATTTG
GCCGAATTTT ATCTACAACA CAAGGCAACT TTATGA
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| Protein sequence | MSTAPLYTVV VPAAGIGQRM QADRPKQYLT IAGKTILEHT LENLYAHPQI EQIIVAINPL
DQYFDSLPIA SKTWVKRVDG GGERADSVLA GLNSLQNADW VLVHDAARPC LAQDDLSKLL
ATAEHSEHGA ILACRVRDTM KRGNSSHDIL HTESRDNLWH ALTPQFFPLD ALRSALGQAM
AQGIEITDEA SAIEWVQGKV HLVEGRSSNI KVTQPEDLHL AEFYLQHKAT L
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