Gene Patl_3853 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3853 
Symbol 
ID4175633 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp4649830 
End bp4650471 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content46% 
IMG OID638056881 
Productlysine exporter protein LysE/YggA 
Protein accessionYP_663407 
Protein GI109900152 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.00256154 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCTCCG CGGACATATT GCTCTCTTTT GCCCTTGCTG CATTGTTACT CAGCCTTTCT 
CCTGGGCCGT CTAATTTGTA CATAATGGCG CGCAGCATTA GCCAAGGGCA TGTTGCGGGT 
ATCGCGGCTG CAGGCGGAAT GGCGGTTGGC TCGCTGGTGT ATGTGTTAGC AACGGCTTTT 
GGCCTAGCGG CAATCTTTAT CTATTTTCCT CTGGCATTTA TGCTATTGAA ACTAGCTGGA 
GCTGCCTACT TGCTTTACCT AGGGTGGGTT TATTTGTTCA GCACTAAGCA CAGTGATGAA 
AGCAAACCTA GAGTAACCAT CATGACTATT CCACGCATTT TTATGCAAAG CATCATCGTC 
GAATTGACTA ATCCTAAAAC CGCATTATTT TTCATCGCGT TTTTACCACA ATTTATTCAA 
CACGATGCTG GCTCAGTCAT TTTGCAGTTT GCCATATTAG GTGGCATGTA CGCACTTATC 
GCTTTTATGT GTGACATTTG CGTGGCAATG CTAGCTGGCA AATTGGGTTC GTGGCTTAAC 
CAGCATCCCG CATTCGAGGT ATGGCAGAAC CGGCTTAGTG GTGGGCTCCT TTTATCGTTA 
GGAAGTTATA TTGCGATAGA TGAACTACTA ATACGGGACT AA
 
Protein sequence
MPSADILLSF ALAALLLSLS PGPSNLYIMA RSISQGHVAG IAAAGGMAVG SLVYVLATAF 
GLAAIFIYFP LAFMLLKLAG AAYLLYLGWV YLFSTKHSDE SKPRVTIMTI PRIFMQSIIV 
ELTNPKTALF FIAFLPQFIQ HDAGSVILQF AILGGMYALI AFMCDICVAM LAGKLGSWLN 
QHPAFEVWQN RLSGGLLLSL GSYIAIDELL IRD