Gene Patl_3852 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3852 
Symbol 
ID4175632 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp4649149 
End bp4649748 
Gene Length600 bp 
Protein Length199 aa 
Translation table11 
GC content44% 
IMG OID638056880 
ProductSH3, type 3 
Protein accessionYP_663406 
Protein GI109900151 
COG category[T] Signal transduction mechanisms 
COG ID[COG3103] SH3 domain protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.000664747 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTAAAGC GATTTTTGTT CAGTGTTACC TGCGCCTTAT TTTTGTTGCC TTCCATACAG 
GCAAGTGCTC AACAATCTCA GGGCGAAACC CAGTATATTT CAGACGATTT ATTCACTTTT 
TTACATTCAG GCCCAGGTAG AAACTACCGT ATTCTAGGCT CAGTTGTGGC GGGCTCTGAA 
GTCACAGTGT TACAAACAGA CAGTGACAGT AATTATGTAG AGATCGTCGA TGATAAAGAC 
CGGACAGGTT GGGTCGACGG TGAATTTGTT AGTCCTCAAA AAAGTTTGCG TGAACTCGTC 
CCTGGCTTGC AGCAACAACT TGCCGATGCC ACACAGAGCA ATAACGCTCA ACAAGATGAG 
AACGACAGTT TACGACAGCA ATTTTCTGAG TTGCAGTCGC AAAATGACAG ACTGACGAAA 
CAACTTAAAA CCTTGGAACA GCAAAACGCT GATTTTAGTC AGAAATTGGA TGCGGCCGAC 
CAAACTGAAA AAATGCAGTG GTTTACCCGT GGCGGTATCG TGGCGCTTAT CAGCTTAATT 
CTAGGGGTTA TAGTCGCTTA TTTGCCCAAG AAACGACGCA AAAGTGATAC TTGGATGTAG
 
Protein sequence
MLKRFLFSVT CALFLLPSIQ ASAQQSQGET QYISDDLFTF LHSGPGRNYR ILGSVVAGSE 
VTVLQTDSDS NYVEIVDDKD RTGWVDGEFV SPQKSLRELV PGLQQQLADA TQSNNAQQDE 
NDSLRQQFSE LQSQNDRLTK QLKTLEQQNA DFSQKLDAAD QTEKMQWFTR GGIVALISLI 
LGVIVAYLPK KRRKSDTWM