| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3831 |
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| Symbol | |
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| ID | 4175611 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4626693 |
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| End bp | 4627349 |
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| Gene Length | 657 bp |
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| Protein Length | 218 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056859 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_663385 |
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| Protein GI | 109900130 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCATAG TCAATTATGC GCCGCCCACG CGGCCATATT TACAGATTGT GTTTAAGGAT
GAATATGTGT TGGTACTCAA TAAACCAAGT GGCTTATTGA CCGTACCAGG CAAGGCCCTA
GAGCATAAAG ACAGCTTAGA ATTGCGGGTG CAGCGGGTTT ATCCTACTGC CCGTATTGTG
CATCGTTTAG ACATGGCCAC ATCAGGTTTA TTAGTCATGG CCCTTGATAA AGACACTCAC
CGTCAACTAT CAAAGCAGTT TGAACTGCGT CAAACACGTA AAACCTATAT CGCCAGAGTA
TTTGGTCAAG TCAATGGCGA ACGGGGTAGT GTCGATTTGC CGCTAATGTG TGATTGGCCG
AACAGGCCTA AACAAATGGT CTGTCAGCAA AGAGGCAAAC CGTCATTAAC TCATTGGCGC
ATTTTAGAGC GAAATGACCA CACGACGCGA ATGGAATTAA CGCCAGTAAC AGGGCGCTCC
CATCAACTAA GAGTACACAT GTTGAGCTTA GGGCATCCTA TTTTAGGGGA TCGTCTGTAT
GCTCACTTTG ACGCGTTGGC CATGGCTAAC AGACTACAAT TGCACGCTCA AACCTTGGGT
TTTACCCACC CTGCGACGAA CGCGTCAGTG GATTTTCACG CCCCAGTTCC TTTTTAA
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| Protein sequence | MAIVNYAPPT RPYLQIVFKD EYVLVLNKPS GLLTVPGKAL EHKDSLELRV QRVYPTARIV
HRLDMATSGL LVMALDKDTH RQLSKQFELR QTRKTYIARV FGQVNGERGS VDLPLMCDWP
NRPKQMVCQQ RGKPSLTHWR ILERNDHTTR MELTPVTGRS HQLRVHMLSL GHPILGDRLY
AHFDALAMAN RLQLHAQTLG FTHPATNASV DFHAPVPF
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