| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3778 |
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| Symbol | |
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| ID | 4175558 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4551126 |
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| End bp | 4552115 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638056806 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_663332 |
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| Protein GI | 109900077 |
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| COG category | [K] Transcription |
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| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATAAAA TTACCTTTTT ACTTTGCGAT AATATGCTGG CCACTAGCGC TACTTTGCCT
TTTGAAATGT TGCGTGCCGC CGAAAGTGCT GCTCGGGCAA AGGAAGGTAG CCAAGTTGAA
CCCGTGCTCA TTCAAACAAC GTCGATAGAC AAATTGCCGA TTAAAACCAG TATTGGTTTT
TCATTGTTAC CCGATACCGA ACTGGCAGAT GTGGGTGACA GCGATATTAT TTATTTACCT
GCTTTATGGC GAAACCCCCG GACAATTGTA AAAAAACACC CCGAAATTTT AGCCTGGTTA
CGCAAGGCTT ATGAAAATGG TGCGATGCTC TCTGCGGTAG GCACAGGCTG TTGCTTCTTG
GCTGAAGCAG GATTGCTGAA TGACAAACCT GCTACCACTC ACTGGCATTA TTTTGATCAG
TTTCAACGAG ACTACCCAAG GGTCAAATTA AAGCGTCAAT ACTTTATTAC CCAAGCTAGC
AATCTGTATT GTTCGGCTAG CGTGAATGCA ATGGCCGATC TTACCGTGCA TTTTGTAAAA
CGACTCTATG GCGAAGCAAT AGCCAGTGTG GTTGAGCGAA ATTTTTCGCA TGAAATTCGC
CGTCCGTACG AGAAAACCAG TTATTTTGAA GGCAGCACAA AACAGCACCC TGATGAGGAA
ATAGTACAAG CGCAAATTTG GCTGCAAGAC AATTACAACC GACAGATTAG CCTGGGCGAG
GTAGCAGGGC GCTTTGAAAT GAGCGTACGC ACATTTAATC GCCGTTTTAA AAATGCCACT
GGCCAAACAC CGCTGCAGTA TTTACAAAAA ATCCGGATTG AAATCGCCAA AGATTTACTA
CAAACAAGTA ATTTAAACGT AAGCGAAGTA GCAGATAAAA TTGGCTATCA AGATGTGGGC
TATTTTACCT CTTTATTTGT GAAGTTACTG GCCACCTCAC CAAGGGAATA CCGAGCAACC
GTTCGCGCTA AGTTATTTAC TGCTGATTGA
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| Protein sequence | MHKITFLLCD NMLATSATLP FEMLRAAESA ARAKEGSQVE PVLIQTTSID KLPIKTSIGF
SLLPDTELAD VGDSDIIYLP ALWRNPRTIV KKHPEILAWL RKAYENGAML SAVGTGCCFL
AEAGLLNDKP ATTHWHYFDQ FQRDYPRVKL KRQYFITQAS NLYCSASVNA MADLTVHFVK
RLYGEAIASV VERNFSHEIR RPYEKTSYFE GSTKQHPDEE IVQAQIWLQD NYNRQISLGE
VAGRFEMSVR TFNRRFKNAT GQTPLQYLQK IRIEIAKDLL QTSNLNVSEV ADKIGYQDVG
YFTSLFVKLL ATSPREYRAT VRAKLFTAD
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