| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3739 |
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| Symbol | |
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| ID | 4175519 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4504716 |
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| End bp | 4505687 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056769 |
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| Product | trans-hexaprenyltranstransferase |
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| Protein accession | YP_663295 |
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| Protein GI | 109900040 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000225438 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATTTAG ACCACATCCT TTCACTCGCT GAGCCAGATA TGCTCGCAGT CAATCAACTG
ATCCAAAAGC AGGTGAATTC AGATGTCTCG CTGATCAATC AACTTGGCTT TTATATAGTT
AATAGCGGCG GCAAACGACT TCGCCCGCTG TTAACAGTCT TAGCGGCAAG GGCTTTGAAT
ATTCAGACCG AGCAGCACCA CACACTAGCC GCGATCATTG AGTTTATTCA TACTGCGACA
TTACTGCATG ACGATGTCGT TGATGAATCA ACCATGCGTC GGGGCCGCGA AACCGCCAAT
GAAGTGTTTG GTAATCAAGC CAGCGTGTTA GTCGGTGACT TCCTTTATAC CCGTTCATTC
CAAATGATGG TGACCCTCGA TAGCATGCGC GTCATGCAAA TATTGTCTGA TGCGACCAAT
GTGATTGCCG AAGGGGAAGT GCTGCAGCTC ATGAACTGTA ATGACCCTGA CACCACAGAA
GAGAGTTACA TGGAGGTTAT TTATAGTAAA ACGGCTCGCT TGTTCGAGGC TGCCACCTTG
TTAGCTGGAG TACTGACTAA GCAAAGTGAA GCGATCGAAA ACGCTATGCA AGACTATGGT
AAGTATTTAG GCACCGCATT TCAGCTTGTT GACGACATCA TGGACTACGC TTCTGACAGT
GAGGAGATGG GCAAAAACAT GGGGGACGAT CTAGCTGAGG GCAAACCCAC CCTCCCGCTT
CTATACGCTA TGTGGCATGG TAATGAGCAG CAAACCGCGA TTATTCGCGA GGCCATTGAA
ACAGGTAACG GCATGGATAA CCTGACTCCG ATTTTAGAGA CCATGGAACA AACAGGAGCA
TTAACTTACA CCAAACAACA AGCTCTAAAA GCCTCCCAAC AAGCCATCGA TGCTTTATCC
CCGATTGAAG AGTCAGTCTA TAAAGAAGCG CTAATTGGCC TAGCCCATAT TTCGGTTGAG
CGTGTAGCTT AG
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| Protein sequence | MDLDHILSLA EPDMLAVNQL IQKQVNSDVS LINQLGFYIV NSGGKRLRPL LTVLAARALN
IQTEQHHTLA AIIEFIHTAT LLHDDVVDES TMRRGRETAN EVFGNQASVL VGDFLYTRSF
QMMVTLDSMR VMQILSDATN VIAEGEVLQL MNCNDPDTTE ESYMEVIYSK TARLFEAATL
LAGVLTKQSE AIENAMQDYG KYLGTAFQLV DDIMDYASDS EEMGKNMGDD LAEGKPTLPL
LYAMWHGNEQ QTAIIREAIE TGNGMDNLTP ILETMEQTGA LTYTKQQALK ASQQAIDALS
PIEESVYKEA LIGLAHISVE RVA
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