| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3730 |
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| Symbol | |
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| ID | 4175510 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4494867 |
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| End bp | 4497284 |
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| Gene Length | 2418 bp |
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| Protein Length | 805 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638056760 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_663286 |
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| Protein GI | 109900031 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1472] Beta-glucosidase-related glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.414697 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAATGT GTTCGATCAA AAGCGTGCTT GCTGTGGGCT TGGCCTCCTT AGCATTTAAT
AGCCTTGCAG CCAGCGGTTA CCAAGACGCC AGTTTGCCCA CCGAAAAAAG GGTAAGTGAT
TTATTGCGTC AAATGACCCT GCAAGAAAAA GTCGCCCAGC TACAAACCGT GTGGCACGAA
GGTCGTGAAC TAAAAGGACC AAATGGTGCA TTTAAGACCA GCAAGGCCGA AAAAATACTG
CCATTGGGCA TAGGCCACAT TGCTCGTCCC AGTGAAGATC TATCACCCGC TGATACCGTT
AAATACACCA ATGCGATTCA GAAGTGGTTA ATCAATAACA CCCGTTTATC CATTCCGGCA
ATTTTTCATG AAGAAGCGTT ACATGGCCAT GCCGCCAGTG AAGCCACGAG TTTCCCACAA
GCAATTGCTA TGGCCAGCAC ATGGGACCCA CAGTTAATTT ACGATATTTA TCAAGCCAGT
GCGCAAGAAG TGCGCGCCCG CGGTGGCAAC CAAGCCCTGA CCCCAATTCT CGATGTTGCT
CGCGACCCTC GTTGGGGCCG GATAGAGGAA ACCATGGGCG AAGACCCATA TTTAATCGGT
GAGTTAGGTG TTTCCGCTGT AAAAGGCTTT CAAGGTAATG AGCAAAATAT TCCTGAAAAT
CGTGTTATGG CGACGCTTAA GCACCTTGCC GGACACGGCC AACCGACAGG CGGCTTAAAT
ATCGCCCCCG CGCCAATTGG CGAACGCGCC CTTCGCGAAG TATTTTTATT TCCCTTTGAA
GCAGCGGTAA CATTAGCCCA CGTAGGCAGT GTGATGGCGT CTTACAACGA GATAGATGGC
GTTCCCTCTC ACGCAAATAA AATGTTGTTA ACCGATATTC TGCGCGATGA ATGGGGCTTT
GATGGCCTAC TAGTCAGTGA TTACTATGCG ATCAATGAGC TTATCACCCG TCACGGATTA
GCGGGCACCA AAGAAAATGC CGCTATCATG GCACTGAATG CCGGTGTCGA TGTGGAAATG
CCAGACCGAG ATGCCTTTCC TCTGCTTGAA AAACTGGTGA ATGACAAAAA AGTATCCATG
CAAAAAATCG ATACTGCGGT GGCGCGCATT CTGCGTGAGA AATTCAAATT AGGCTTATTC
GAAAACCCTT ATACAGATGA AAGCGCAGTC AACGCTATTG TTGGCAGCCA AGCGCACCGT
GACTTAGCGC AGACCACAGC TGAAAAAGCC ATGGTGCTGT TAAAGAACGA CGGGGTTCTT
CCGTTAGATA AAACCAAAAT AAAAAGCGTG GCGGTCATTG GCCCCCATGC TGATGAAACC
TTATTAGGAG GCTACAGCGA TATTCCGCGT CAAACGGTGA CCATTTTAGA CGGATTGCGA
AACAAATTAG GTAAAAATGT CAAGGTCGCG TTTTCTCGTG GTGCCCTTAT TACACAGGAC
ATTGAAGACC CATCACCCGC GTCAGTAAAA GCGCAAAGCT ACGCTAAAGA GCGCTGGAAC
AAAGAGAACA TGAAGCTTGC CGATTTGAGC AACGCTCAAG CACTTATTGA TGATGCAGTT
GCCCTGGCCA AGCGCAGCGA TGTCGCCGTG GTCGTGGTGG GCTCAAATGA AGGGAGCTCC
CGTGAAGCCT GGGCTGAGAA TCACTTAGGG GATCGTGATT CATTGCATTT ATTGGGCAAA
CAGCACGAAC TGGTTGAAGC GATTTTAGCC ACGGGCACAC CGACTGTGCT GATCCTGTCA
AATGGTCGCC CGCTTACATT AGGTAACCTG TATCAAGACG CTCCCGCAAT TATTGAAGCT
TGGTATTTAG GGCAAGAAAC GGGTACCGCA GTAGCAAATG TACTCTTTGG TGACGTAAAC
CCTAGTGGTA AATTGCCCTT AACCCTGCCA AAAACGATTG GTCAGCTACC TGTGTTTTAC
AACCACAAAC CATCCGCCAA GCGTGGTTAT ATTTTTGGTG ACACCGCTCC TGCATTCGCC
TTTGGCCATG GGTTGAGTTA CACCACGTTT GACTATGGTG ATTTGTCCAT TGATGCCGTA
AATGCCACAG CGAACGGCAC TGTAAGCGCA AGCTTTACAC TAACCAATAG CGGCAATGTT
GACGGCGAAG AAGTAGCTCA GCTGTATATT CGCGATGTGT TTTCCAGTGT GACTCGCCCT
GTGAAAGAGC TAAAAGGCTT CAAGCGAGTA GCGCTTAAAG CAGGTGAGAG CAAGAAGGTC
ACATTCGAAT TACCGGTCAA TCTATTGGCG TTTTACGATG CACAGATGCG TTTTGTGGTA
GAGCCAGGTG AAATAAAGCT GATGATCGGC AGTGCTTCAG ATGATGTACG TTTAGAAGAC
ACATTTGAAA TTACTGGCGA AATTAGTGAA ATACAACAAG CGCAAAAAGC TTATTTGACC
AAAGTGAGTG TGCAATAG
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| Protein sequence | MRMCSIKSVL AVGLASLAFN SLAASGYQDA SLPTEKRVSD LLRQMTLQEK VAQLQTVWHE
GRELKGPNGA FKTSKAEKIL PLGIGHIARP SEDLSPADTV KYTNAIQKWL INNTRLSIPA
IFHEEALHGH AASEATSFPQ AIAMASTWDP QLIYDIYQAS AQEVRARGGN QALTPILDVA
RDPRWGRIEE TMGEDPYLIG ELGVSAVKGF QGNEQNIPEN RVMATLKHLA GHGQPTGGLN
IAPAPIGERA LREVFLFPFE AAVTLAHVGS VMASYNEIDG VPSHANKMLL TDILRDEWGF
DGLLVSDYYA INELITRHGL AGTKENAAIM ALNAGVDVEM PDRDAFPLLE KLVNDKKVSM
QKIDTAVARI LREKFKLGLF ENPYTDESAV NAIVGSQAHR DLAQTTAEKA MVLLKNDGVL
PLDKTKIKSV AVIGPHADET LLGGYSDIPR QTVTILDGLR NKLGKNVKVA FSRGALITQD
IEDPSPASVK AQSYAKERWN KENMKLADLS NAQALIDDAV ALAKRSDVAV VVVGSNEGSS
REAWAENHLG DRDSLHLLGK QHELVEAILA TGTPTVLILS NGRPLTLGNL YQDAPAIIEA
WYLGQETGTA VANVLFGDVN PSGKLPLTLP KTIGQLPVFY NHKPSAKRGY IFGDTAPAFA
FGHGLSYTTF DYGDLSIDAV NATANGTVSA SFTLTNSGNV DGEEVAQLYI RDVFSSVTRP
VKELKGFKRV ALKAGESKKV TFELPVNLLA FYDAQMRFVV EPGEIKLMIG SASDDVRLED
TFEITGEISE IQQAQKAYLT KVSVQ
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