Gene Patl_3728 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3728 
Symbol 
ID4175508 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp4492590 
End bp4493741 
Gene Length1152 bp 
Protein Length383 aa 
Translation table11 
GC content47% 
IMG OID638056758 
ProductAlpha-L-arabinofuranosidase 
Protein accessionYP_663284 
Protein GI109900029 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3507] Beta-xylosidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCACACAC GTTATTTAAC TCTATTGGCT TTAAGTGCCG CAATGCTTTC AGGTTGTTCA 
GAACAATCTA GCCACAAAGA AGCCGCAAGC GATACGTTGC AAACTACTGC GAGCTCGAAC
GCGCCTGCAA CACATCAACA AAAAACGGCA AAGGCAGAGC ACAAAGGCTT GGATGAGTAT
GGTTCTAAAT CTTTACCTTT AGTCAGCAAT ATATATACCG CAGACCCTTC TGCACATGTG
TTTGACGGTA AGTTGTATAT CTACCCGTCA CACGATTACG AGGCGGGCAT CCCACAAAAT
GATAACGGTG ATCATTTCGC CATGCGTGAT TATCATATCC TGTCCATGAA TGAAGTCGGC
GGAGAAGTCA CTGATCATGG CGTAGCGCTA TCTGTTGATG ATGTGCCTTG GGCGGGTCGT
CAAATGTGGG CGCCTGATGC TGCCAGCAAA AACGGCCTGT ATTACCTCTA TTTTCCGTTA
AAAGACCAAC AAGATATTTT TCGTATCGGT GTGGCTACAA GTGATTCACC TGTTGGCCCG
TTTACGCCTG AAGCAGAGCC AATGGCCGGC AGCTTTAGCA TGGATCCCGC CGTATTTGAG
GATGATGACC AACAGCACTA TTTGTTCTTT GGTGGCATTT GGGGAGGCCA ATTGCAGCGC
TGGACAAAAG GTGAATACAG TCCCCAAGAT GACTACCCTG CAGATGATGC ACCAGCCCTG
ATGCCCAAGG CCGTGAAGCT AGCAGATAAC ATGGTGTCTA TGGATGGTGA GCCACAAGAC
ATCATGATTT TAGATGAAAG CGGCAAGCCC ATTAAACAGG GGGATTTAGA GCGCCGGTTC
TTTGAAGCCG CTTGGGTACA TAAGTATCAA GGAAATTACT ACCTGTCTTA CTCGACTGGC
GATACGCACA AAATTGTTTA TGCCATGAGT GAGAACCTCA TGGGGCCATA TACCTTTAAG
GGGGTGGTAC TTGACCCCGT TATCGGTTGG ACGAATCATC ATTCTATCGC TGAGTTTCAA
GGCAAATGGT ATTTGTTCTA TCACGATAGC ACGTTATCAA AAGGGCAAAC CCACTTACGG
AGTGTGAAGA TGGCAGAGCT GAAATATAAC GAGGATGGCA CGATTGTCCC TTACCAAGCT
TATTATCAAT AA
 
Protein sequence
MHTRYLTLLA LSAAMLSGCS EQSSHKEAAS DTLQTTASSN APATHQQKTA KAEHKGLDEY 
GSKSLPLVSN IYTADPSAHV FDGKLYIYPS HDYEAGIPQN DNGDHFAMRD YHILSMNEVG
GEVTDHGVAL SVDDVPWAGR QMWAPDAASK NGLYYLYFPL KDQQDIFRIG VATSDSPVGP
FTPEAEPMAG SFSMDPAVFE DDDQQHYLFF GGIWGGQLQR WTKGEYSPQD DYPADDAPAL
MPKAVKLADN MVSMDGEPQD IMILDESGKP IKQGDLERRF FEAAWVHKYQ GNYYLSYSTG
DTHKIVYAMS ENLMGPYTFK GVVLDPVIGW TNHHSIAEFQ GKWYLFYHDS TLSKGQTHLR
SVKMAELKYN EDGTIVPYQA YYQ