Gene Patl_3723 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3723 
Symbol 
ID4175503 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp4483430 
End bp4486141 
Gene Length2712 bp 
Protein Length903 aa 
Translation table11 
GC content42% 
IMG OID638056753 
Productperiplasmic sensor hybrid histidine kinase 
Protein accessionYP_663279 
Protein GI109900024 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.803649 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTTAGAA CCCTGAAAGC CCAGATACTG CTTGTTTCGG TAATATTAAT TCTTTTACTG 
GTATCACAAG TATTTGTTAC TCGCAGCAAT CATAGCACCT TCGTAAACAG TTTAGATCTG
ACCCATCAAG CCGTTATAAA AGTGAGCTTG GTGCGAGAGC TTGAGCGAGA TGTATTAGAC
TTACAACGGA ATGTATTAAT ATATAAGGAT TCGGCTAGTA AATCTGCTAT TGCGCGTTTC
AATTCATTAA TTCAAAGTTC AATTGATAAT CTGGCAACAC TAGAGTCGCT AACCAGCAAA
GAAGAACAAG CTGATATCTA TCACGGCTTT ATTTCTAGAA TGCGTAATCA TATAGCCGAA
TACAAAGATA ATTTTTCAAA CGTAATTACT GGGCGCAGTA AGCGTGACAA GCTCTTTGAG
AAAGATCTAA CCGTTGATAT CAATGACATA TTAGCGTCTT TATCCCAAGG GGATAGTTCT
ACCTCTCTCA GTTTATCACG CACTAAATAC CACATCACTC GGGCGGAAAA CGTCACCTAT
CAATATCTGC TCAACCCAGA TTACCAATTG GTAGAAAGTT TCAGAGGTGA GTTAAGTCAA
GCGAAGGAGA GTTTACTACA AAGTGCTTTA CCGAACGAAA TGACATCTGC CTTAATCACA
AAGCTAGACA AAGTAGACGG TGAGTTTTTA CAACTCACCA ATGTCACAAG TGGGTATTTG
TTTTTAGTTA ACGTGGTTAT GGCGGGCTCA GCTAACGAAT TTCTATTTAT GGCCAGAGAG
CTCAATCGCC TTGTGACCTC AAAATTGGGC GACACCAATG AGCAAGTAAA AAGTAACATT
GAAAAGAATC AAATAAGCAG TGATTTATTT TCTATTATCG GGATTTTCCT TGCCTGTATC
ACAGCTTACT TTTTAGCGTC TCGGATCATG ATCCCCATCA ACACCATTAC GGAGGTATTT
AAAAAGCTTG CCAAAGGTGA AGACGTTGAT GCCATTCCAG GGATCACTAG GCACAACGAA
ATCGGTCAAT TAGCCAACGC AGCGGATGTA TTTCACGAGA AAAACAAGCA GACATCCGCC
TTACTTGCTC AGGCTCAGCG TCTTAACAGC GAGCAAGAAA TGCTAAATGC GGAATTAGTT
GAGTCAAAAC ACAAAGCGGA ACAAGCCACG GTATCTAAAA GTATGTTCTT GGCGAATATG
AGTCACGAAA TACGCACCCC AATGAATGGC ATAATCGGTT TGTTAGATGT CGTTATGAAA
AGTGATTTGA CACCCACCCA GCGCCAGCAT TTGAATAAAG TAGTGTACTC AAGCCAGATA
TTAATGAGCC TGATCAACGA TATTTTAGAC TTTTCAAAAG TTGAAGCGGG CAAACTAGAT
ATTGAACAAG TGGAGTTCTC CCTCAATTCT GTGTTTGCTA ACTTATTGAC GAATATTTCT
GCTCGGGCAC AAGAGAAAAA TCTCAATGTG CGATTTATAT GTGATCCCAA TATTCCCCCA
ACGCTAATAG GCGACCCTTT GCGCATCAGC CAAGTGTTAC TGAACTTAAC CAGTAATGCC
GTCAAATTCA CTCGTAATGG TTCAATTACC ATATCTATAA CCCATGATGT TATACCCAAC
AGTGACAAGG TATTGCTCAA GGCTCGTGTG AAGGATACAG GCATTGGCAT GTCTAAAGAG
CAGCTAGGAA AAGTCTTTGA GTCATTTACC CAGGCCGATG GCACCACCAG CCGTGATTTT
GGTGGTACAG GTTTGGGCTT AACGATAGTG AAGCAGCTGG TGCATCTTAT GGGGGGCAAT
GTCACCGCAC AATCAGAGCT CAATGTTGGC AGTACATTTG AGGTGACATT CACTGTAATC
GTCCAATCTG ATGAGCAGCA TATTTTTCAT ATTGCGCCTC AGCCTCAGCG CAAAATGTAT
TATTTCAGTA AGACGCCCAA AGGCTTGATT GAACAGCAGT ATTTCAACAA TGTCGAAATG
GATTATCATC ACTTCCCGCA TATGCAGCTT GAGAAGATGT TGCCTGAAAT AACAGAGAAT
GACATTGTTA TCATAGACGT GGCGGACTTA GCTGAACACA AAGCCATAGG TCCGTCGATA
CAGAAACTGA AAGACGATGG TAGAAATGTT GGCTTTATTA CTGATACTCA ACCGAGTAAT
TTGCCACAGA AGCTGATTAA TATTTGGAGC TTCCCTTGTT TAACCCACCC TTTTACACCT
GGTCACTTGG TCTCGTTTAT TCATTCACTG CTGAATGAAG AGCAGTTCGT ATCTGACATC
CCTAGCCCGC AGTTCAATGA GCAAGTGGAG TACGACGGTC ATATTTTGCT GGTAGAAGAC
AATAGCATTA ACCAGGTTGT TACCGGAGAA ATGCTGCGCG TGCTTGGCAT CACGTTCGAT
ATTGCTGAAA ATGGCCAGCA AGCGGTCACA AAAGTGATTA ATTCCGCGCA TTATGACGTG
GTGTTAATGG ACATACAAAT GCCAGTCATG GACGGCTATC AGGCCACCAT TGAAATACGT
CAACAAGGTC TTCTTGACCT GGTCATATGT GGATTATCCG CGAACGCAAT GAAAGAAGAT
TTTGTACAAG CCAAAGAAGT GGGCATGAAC GAGTATCTAA CCAAGCCGTT AAAGTTAGTC
GCCTTAGAAG ACATGCTCAG TAAGTATCTA CCCGCTAAAA TAATGGTAAA AGCACAAACA
GAAAACGAAT AG
 
Protein sequence
MFRTLKAQIL LVSVILILLL VSQVFVTRSN HSTFVNSLDL THQAVIKVSL VRELERDVLD 
LQRNVLIYKD SASKSAIARF NSLIQSSIDN LATLESLTSK EEQADIYHGF ISRMRNHIAE
YKDNFSNVIT GRSKRDKLFE KDLTVDINDI LASLSQGDSS TSLSLSRTKY HITRAENVTY
QYLLNPDYQL VESFRGELSQ AKESLLQSAL PNEMTSALIT KLDKVDGEFL QLTNVTSGYL
FLVNVVMAGS ANEFLFMARE LNRLVTSKLG DTNEQVKSNI EKNQISSDLF SIIGIFLACI
TAYFLASRIM IPINTITEVF KKLAKGEDVD AIPGITRHNE IGQLANAADV FHEKNKQTSA
LLAQAQRLNS EQEMLNAELV ESKHKAEQAT VSKSMFLANM SHEIRTPMNG IIGLLDVVMK
SDLTPTQRQH LNKVVYSSQI LMSLINDILD FSKVEAGKLD IEQVEFSLNS VFANLLTNIS
ARAQEKNLNV RFICDPNIPP TLIGDPLRIS QVLLNLTSNA VKFTRNGSIT ISITHDVIPN
SDKVLLKARV KDTGIGMSKE QLGKVFESFT QADGTTSRDF GGTGLGLTIV KQLVHLMGGN
VTAQSELNVG STFEVTFTVI VQSDEQHIFH IAPQPQRKMY YFSKTPKGLI EQQYFNNVEM
DYHHFPHMQL EKMLPEITEN DIVIIDVADL AEHKAIGPSI QKLKDDGRNV GFITDTQPSN
LPQKLINIWS FPCLTHPFTP GHLVSFIHSL LNEEQFVSDI PSPQFNEQVE YDGHILLVED
NSINQVVTGE MLRVLGITFD IAENGQQAVT KVINSAHYDV VLMDIQMPVM DGYQATIEIR
QQGLLDLVIC GLSANAMKED FVQAKEVGMN EYLTKPLKLV ALEDMLSKYL PAKIMVKAQT
ENE