| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3630 |
|---|
| Symbol | |
|---|
| ID | 4175410 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4369732 |
|---|
| End bp | 4372092 |
|---|
| Gene Length | 2361 bp |
|---|
| Protein Length | 786 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638056660 |
|---|
| Product | DNA polymerase II |
|---|
| Protein accession | YP_663186 |
|---|
| Protein GI | 109899931 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0417] DNA polymerase elongation subunit (family B) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGGGAA ACACTAATCG AGGATTTATT CTTACCTCGG ATCAGCGCGA TATTGGCGCA
AAGACCTGTC TTGAATTTTG GTTGTTGAGC GACAAGGGGC CAATCAAAGT CACTACTGAG
GCTCAGCAGT CGGTTTTCTT TATCAGTCAG CAAGATACAC AGAAAGTATC CGATATTCTG
GCCTCAAGTG AAATCCGCTT TACCCTTAAA GCCTTGCCCT TAAAGCGTTT TGACCAACAG
TTGGTCAGTG CAATTTACTT TGCTAGAACG AAGCAAGCTT ATGCCGCTAA AGAGCGTTTA
AGAGTGCACG AGGTGGCGTT TTACGAAGCC GATATACGCT TAGCTGACAG ATATTTAATG
GAGCGCTTTA TCTATGCAAG CGCCGATATC AGTGGTGTTC AACAAGGAAC ATCGCCTTAT
GTCACGTATA CACAAAGCCA CTTAAAACCG GCCCAGTACA CCCCCTCTTT TTCAGTACTC
TCAATTGATA TTGAGTGCAG CGAGAAAGGG GAGCTGTATT CAATTGGCCT AGCGCAGAGT
AACTACCAAA CAGTATTTAT GATTGGTGAA GCCGAAGAAG GCCCAAAGTG GTTGCAATGG
GTTAATAATG AAGAGGCGCT CATTCGGTCT TTTATTACTG AGGTTAATCG TATTGACCCA
GACATTATCA TTGGCTGGAA TGTGGTTAAT TTTGATTTTC GGCTGCTTAT TGAGCGGGCC
CAGCTGTATA GGCTAAAGCT TACATTAGGC CGAGGTGGCG AAGCCGTTTA TTGGCGCGAC
GCCCCAAATG AAGTGAATCA AGGCTATATC AGCATGCCTG GCCGGGTGGT GGTAGACGGT
ATAGATGCGC TTAAAACCGC AACGTATCAA TTTAGCAGTT TCAGCTTGGA GTTTGTTGCC
CAAACGCTGT TGGGTAAAGG CAAACTCACG GATGACGTTG ATGACAGGCT AGCCAAAATT
AAGCACGACT TTTTATATAA CAAAGTCAAA CTAGCTGAAT ATAATCTGCA AGACTGCCAA
CTCGTACTAG AGATTTTTGA GCATACAAAA ATGTTGGACT TTCTGACATT GCGCAGTCAA
TTAACGGGCC TTGAATTAAA TCGCGTGGGT GGCTCAGTAG CCGCTTTTGT TAATCTGTAC
TTACCAAAAC TGCATCGCGC TGGGTATATA TCGCCGAACC GCCCTATTGA CGGCGGCTTA
GCCAGCCCAG GTGGATATGT CATGACCTCA CAGCCGGGTC TGTATCGTAA TGTACTGGTG
CTCGATTTTA AGAGCTTGTA TCCGTCAATT ATTCGCACAT TTAAGATAGA CCCCCTTGGT
TTGGTAGAAG GCCTGCGGTA TCCAGAGGCC GGCATACAAG GGTTTAAAAA CGCTGTTTTC
TCTCGAGAGC ATCACTTCTT ACCAGACATC ATCACCTCCT TATGGCAACA AAGGGATACG
GCCAAACGCG ATCAAGATGC GGCGCGCTCT CAAGCGATTA AAATACTAAT GAACTCGTTT
TATGGGGTGC TTGGCTCAGG CGGCTGCCCC TTTTACGACA CGCGTTTGGC CAGTTCAATC
ACCTTGCGCG GTCATGAAAT CATGCAAACT ACAGCCACTT GGGTTGAAAG CATGGGTTAT
AAGGTAATTT ATGGCGATAC CGATTCCATT TTCGTTTGGT TGGGTGATGA TATTACCGCT
GATGAAGGGC ATAACATCGG GCAGCAATTG CAGGGTGAAA TTAATCAGCG CTGGACTCAA
GCCATCACCG AACAACATCA ATTACAGAGT TATTTGGAAA TTGAATTTGA AACCCAGTTT
GAGCGATTTC TTATGCCAAC GATACGTGGC TCCGAGCTGG GTAGTAAGAA GCGTTATGCT
GGCCTGAAGC GGCAAATAGG AGGGCAAGCT GAACTTGTTT TCAAAGGGTT AGAGTCGGTA
CGTTCTGACT GGACGCCTAT GGCGAAGTCG TTCCAATTGG CTCTTTACGA GCGGGTATTT
GCTGATCAAG ACGTGAAAGA CTATGTGCTG CGCGTCGTAG AGCAAACACG AAATGGTGAA
TTGGATGAAC AACTGGTATA TCGCAAGAGG ATCAGGCGTC CCTTGGTGCA GTATATTAAA
AACGTCCCGC CTCACGTCAA GGCCGCGCGC CTAGCAGACG AACAGAATCA GCAACTGGGC
AAACCTCTGC GCTATCAACA TAAAGGGCAA ATTGCTTATG TGATTACCTT AAACGGCGCG
CAGCCTGTTG GGTATCAAAA CAGTGCGTTA GATTACGAGC ATTATATTGA TAAACAAATA
CGACCTATTG CTGAGAGTAT TTTGCCCTTT ATCGGGCTAT CTTTTACTGA GATAACCAGT
GCTCAATTGG GTTTATTTTA G
|
|---|
| Protein sequence | MMGNTNRGFI LTSDQRDIGA KTCLEFWLLS DKGPIKVTTE AQQSVFFISQ QDTQKVSDIL
ASSEIRFTLK ALPLKRFDQQ LVSAIYFART KQAYAAKERL RVHEVAFYEA DIRLADRYLM
ERFIYASADI SGVQQGTSPY VTYTQSHLKP AQYTPSFSVL SIDIECSEKG ELYSIGLAQS
NYQTVFMIGE AEEGPKWLQW VNNEEALIRS FITEVNRIDP DIIIGWNVVN FDFRLLIERA
QLYRLKLTLG RGGEAVYWRD APNEVNQGYI SMPGRVVVDG IDALKTATYQ FSSFSLEFVA
QTLLGKGKLT DDVDDRLAKI KHDFLYNKVK LAEYNLQDCQ LVLEIFEHTK MLDFLTLRSQ
LTGLELNRVG GSVAAFVNLY LPKLHRAGYI SPNRPIDGGL ASPGGYVMTS QPGLYRNVLV
LDFKSLYPSI IRTFKIDPLG LVEGLRYPEA GIQGFKNAVF SREHHFLPDI ITSLWQQRDT
AKRDQDAARS QAIKILMNSF YGVLGSGGCP FYDTRLASSI TLRGHEIMQT TATWVESMGY
KVIYGDTDSI FVWLGDDITA DEGHNIGQQL QGEINQRWTQ AITEQHQLQS YLEIEFETQF
ERFLMPTIRG SELGSKKRYA GLKRQIGGQA ELVFKGLESV RSDWTPMAKS FQLALYERVF
ADQDVKDYVL RVVEQTRNGE LDEQLVYRKR IRRPLVQYIK NVPPHVKAAR LADEQNQQLG
KPLRYQHKGQ IAYVITLNGA QPVGYQNSAL DYEHYIDKQI RPIAESILPF IGLSFTEITS
AQLGLF
|
|---|
| |