| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3628 |
|---|
| Symbol | |
|---|
| ID | 4175408 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4368142 |
|---|
| End bp | 4369269 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638056658 |
|---|
| Product | aminotransferase, class I and II |
|---|
| Protein accession | YP_663184 |
|---|
| Protein GI | 109899929 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1168] Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.217601 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTTTG ACAAAATTAT TGATAGAACC CCCTCAAATG CCTACAAATG GGAACGCTAC
AAAGGTCGAG ATATTCTCCC TATGTGGATT GCCGACACAG AATTTCGCTG TGCAGAGCCT
ATTCTTGATG CATTAAAAGC CCGTGCTGAA CATGGATTAC TTGGCTACAC CTTGCCTAAT
CACGCGGCTG GCGCAATTCA AGCTGTGGTT GATTGGATGG CCAAGCAATA TGATTGGAAA
ATTGAGCCTC AGTGGTTGGT ATGGACTCCA GGGGTCGTGC CTGGCTTTAA CATGGCGTGC
CAAGCTTTCT GCCAACCCGG CGACAAGGTT ATTGTGCAAA CTCCAAATTA CCCACCTATG
TTAGCGGCCC CAAAACTGAA TGGATTAGCG CGTGCTGATG TACCCACGGT GGAAGTGGAC
GGTAAGTGGA TGCTTGATTT CGATGTGCTA GAGCAGCACG CTAAAGATCC AAAATGCACC
TTATTTATTT TGTGCAACCC AATGAATCCA GTAGGCAGTG TGTTAGACGA GGCTCAACTT
ACCCGCGTGG CAGAGATATG CGCGGCGAAT AATGTGATGC TATGTTCTGA TGAAATTCAC
TGCGATCTGA TTCTTGATAA AGACGCGAAG CATATTCCTG CGGGTAAGCT CGCCAGCGCA
GAAAATAACT CAGTCACCCT AATGGCAGCC AGTAAAACCT TTAACGTGGC AGGTTTGGGC
ACGTCATTTG CGATTATTCC TGATGCTAAA GTGCGTCAGC GTTTTACTCA AGCGGGGCAA
GGTTTAGTGC CTTGGGTGAA CGTAATGGGC CTAGCGGCGA CAGAAGCGGC GTTTACTCAA
TGTGATGATT GGTTGGCTGC CCAGTTAGAT TACTTACGCG CTAATCGTGA CTACTTAGTG
GAGCAAATTA ACCAAATCGA CGGCTTACGC GTTATTGCCC CACAAGCGAC TTTCCTCGCT
TGGATCGACG CTAGCGGCTT AGGCGTGGAA AATCCTCAAA CATATTTTGA AGAAAAAGGT
GTCGGGCCAT CACCCGGTAT CGATTTTGGA GATAAACAGT TTGTGCGCAT AAATTTCGGT
TGCCCCCGTT CACAACTAGA GCAAGCGATT AACTGTCTTA AAGCCTAA
|
|---|
| Protein sequence | MQFDKIIDRT PSNAYKWERY KGRDILPMWI ADTEFRCAEP ILDALKARAE HGLLGYTLPN
HAAGAIQAVV DWMAKQYDWK IEPQWLVWTP GVVPGFNMAC QAFCQPGDKV IVQTPNYPPM
LAAPKLNGLA RADVPTVEVD GKWMLDFDVL EQHAKDPKCT LFILCNPMNP VGSVLDEAQL
TRVAEICAAN NVMLCSDEIH CDLILDKDAK HIPAGKLASA ENNSVTLMAA SKTFNVAGLG
TSFAIIPDAK VRQRFTQAGQ GLVPWVNVMG LAATEAAFTQ CDDWLAAQLD YLRANRDYLV
EQINQIDGLR VIAPQATFLA WIDASGLGVE NPQTYFEEKG VGPSPGIDFG DKQFVRINFG
CPRSQLEQAI NCLKA
|
|---|
| |