| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3604 |
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| Symbol | |
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| ID | 4175384 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4342028 |
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| End bp | 4345546 |
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| Gene Length | 3519 bp |
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| Protein Length | 1172 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638056634 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_663160 |
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| Protein GI | 109899905 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCACGAC TAAACCTGCT AGACGCGTAC TACTGTGGAT TAGAAGCCGT AAGTAGCGCG
ACACTGCACA TAACCAAAGA TCAAATCGTA TTGTTTGCGA ATGAAGCTGC TTGCGAGCTG
TTTGGGCTAG ACAGCAAATC GTTGATTAAT ACGCCGGTCG AGCGGTTATT GGAGAATTTT
TACTCTAGCA ATGATCACGC ATTGAATAAT AATCTGTTCT ACTCAGAAGC CAAGGGCAAC
AAGCTGCTTG AGGGCATATT CAAATGCACA CTTGCAAGCG GCGAATACCT CATAGCACAA
GCCAGTGTTA AATCTGTTGA TTGGCTTGAT GATGACTCCT CATACGTCGT CACAATTGAC
CCAGATAATG TTCGCCCTCC TTCGGGCAAT GAAATTTACG ACATCATTCA CCGCATTAAC
GTAGCCACTA CCGTGGCTCA AATTGGTATT TGGGAGTTCA ACCTTGATGA GCAAAAACTC
ATATGGGACG AGCAAATGTA TACGCTATAT GGTTGCAACC CCAAGGTCGT TAGTGGTGAA
TTAAGTCAGT GGAGTGATTT GCTTCACCCT GATGATAAAG AGGAAGCGCT GAGTGCCTTA
AATCATTCTT TAACGAAGAT TGCTAAACTT GATATTGCCT TTCGTATTAT TACTCCCTGT
GGCGAAACTC GGCATATGCG CGCCTTTGCT AGGCCATTGC GCAGCCCAAC GGGCAATGTG
GCGAAGATTA TCGGAGTGAA TTACGACATT GGTGCACAGA AGCAACACCA GCAATGGTTG
GAAAATGGGC TGCAAAGCAA CGAACTGTTT ATTAAAGTTT TACGAGAAAC TGACAACGCT
GTCATCATCA CGGACGAGAA CGTCAAAATA AAATGGGTAA ACCCGGGCTT CACTCGTATC
ACAGGGTATT ACCTTGAGGA AATCTTAGGT AAAAACCCTG GCCACGTGCT GCAAGGTTCA
CAAAGCAACC CTGACAAAAT AGCCATTATG CGCAGAGCCG TTGAAAAACG AGAACGATTC
AATGTGGAAA TTCTCAACTA TCGCAGAGAC GGCGAGCATA TTTGGTTGAA AATCAATAGT
CACCCTATGT ACCTAGGCGG CAAGTTTAAC GGTTTTATTG CCATCCAAAG TGATATCACC
GAGCAGAAAA ATGCAGAGTT AGCTCTGCTT AAAGCCAATA AGATTCAAAA AGCCATACTT
GATAGTGCTC ACCTGTTAAT GATTTCATGT GATGCGCAAG GCAAAATACT GACCTGCAAT
CAAACTGTAG AAAAAGCATT GGGCTATACC AAAGCAGAAC TAAAACAAAG CGGCAATATT
CAGCAGTTTA TGATGCAAAA TGAGCTGATT GATTTCATGC AAGTCAGCAC CCAGCGACAA
GGTTCATCAC TCGACGCCTT CTTCTATCTA GCCTCTCAAG GGCAAGTGGA TGAAAATCAG
TGGACGTTCG TAACCAAAAA CAATGTTCAA GTTCCCATGG AGGTCACGGT TACCGGGGTC
ATGTCACCCG ATAATCAGGT AGAACGCTAC TTACTCGTTG GCCGAGATAT CAGCCAAATT
AAGCAATTTG AAAAAGAGCG CCGCCACCAA CAAGATTTAC TAGAAACCAC AGGCGAAATG
GCTAATCTGG GAGGTTGGGC ATTAAATCTT GAGACCGATG AAGTCACTTG GTCAGACCAA
GTTTACCGGA TTCATGAATT ACCGGTCGGT TCAGATGTAG ACCTCTCCAG CGCGATGAAG
TTTTATCCTG AGGATGTTCG CCCATTGGTG CAAAAAGCCA TTGATAGCTC CATAGCTGCC
GGCAAAAAGT GGGATCTGCA GGTTCCTTTT ATTACGGCCA AAGGTAAACA TATTTGGGTC
CGGGCTGTTG GCTATGCAGA ATATCAAAAT GGTCGACCTG TTGTATTGAG AGGCGCTTTT
CAAGATATCA CCGAAATGAA AAAAGCCGAA GAGCAAGCCA AAGAAGCGAG CCGCGCGAAA
AGCGAATTTT TGGCTAACAT GAGCCATGAA ATACGTACTC CCATCAATGG GATCGTTGGT
ATGAACGACT TATTGCTAGC CACTGAATTA ACCGACAAAC AGCGTCATTT TGCTGAATTG
GTGCACAGTA GTAGTGAATC TTTATTGTTA CTGATCAACG ACATCCTAGA TTTTTCTAAA
ATCGAGGCAG GCAAATTAAG TATTGAGTCT ATCTACTTTG ATCTACATCT TTTGTTGGGC
AATATTATTG ATACATTTGC TAGTCGCGCC CAACAAAAAG GGCTTGAGCT CGTGTTCGAT
TTGCAGATGG ATGTGCCCCA ATGGATAACA AGCGATCCCG GTCGTATACG GCAAATTTTG
AACAACCTAT TAGGTAATGC CATCAAATTT ACTCATCACG GTGAAGTCAT TATGCGGGTT
GCACTAGAGG GGGATAATCA ACTTAAATTC TTCGTGCAAG ATACCGGGAT TGGCATTCAC
GAAGATAATC AAAAAGCGTT GTTCTCTAAA TTTATGCAGG TTGATTCATC AACCACACGC
CACTTCGGTG GCACAGGGCT CGGGTTGGCC ATCAGCAAAC AATTGAGTGA ACTTTTAGGT
GGCACAGTCG GCGTATCTAG TCAGTGGCAA CAAGGCTCCA CTTTTTGGTT TACCATAGCG
CCTGAAGCGT TGAACGAAAA CCAAATACAA TTTAGTCCGT TGTTTCCTGA GCGCGAAGCG
CCGCTGCAGG TTTTATTGGT AGACGACAAC CCCACGTTAA GCACAGTTTT AGGTAAATGG
CTCACGTCAA ATAACATGGT GGTACAACAC GCTGAAAGTG CTTCAAGTGC GTTAAAAGCA
CTCAGACAGT CGCATCTAAA AATGACGAAA ATAGACGTCG CATTAATTGA TAGTAATTTG
GCTGGCATTA ATGGAATTGA ACTCACCAAA GCGATCCGCA GCAACGACCT CTTTGCCAAG
TTACACATCA TATTGATGAC GCCCCACGAC TGGCTTGAGA AGGGTACGTC AAGCCAACTA
GCTAACCCTG TTAGTTATAT AGCGAAACCG GTTAAGCCAG AGACACTCAA AGGAGCGTTT
ACTGGAGCAT TGGAAAACGG CGATAACACC AAGCTCATTA CCGCCTTACC CGAGACCAAA
CTACTCAACA AATATCGCCA AGCGCCACAT ATTTTATTGG TAGAAGATAA CTTTATTAAT
CAACAAGTGG TTATTGAGAT GCTTAAAAAG CTGCACTGCA GCGTACAGGT GGCTGAGAAT
GGCCAAGAAG CAATTCATAC TTTGGAAGAA TCAGAAGCGA AATTTGATGC GATATTGATG
GATTGCCAAA TGCCCATCAT GGACGGCTAC GAGGCGAGTC GTACCATCCG CAAAAGTCAG
CATAGTAATT ACGCATCAAC GTTGCCTATC ATCGCATTGA CCGCCAATGC CATGAAGGGA
GATAAGGAAG CCTGCTTAGC TGCTGGCATG AATGCTTATT TGACTAAGCC AATCGTGTTA
ACTGAGTTGA GGGCTGAGCT CATCAAGTGG TTAGCTTAA
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| Protein sequence | MPRLNLLDAY YCGLEAVSSA TLHITKDQIV LFANEAACEL FGLDSKSLIN TPVERLLENF
YSSNDHALNN NLFYSEAKGN KLLEGIFKCT LASGEYLIAQ ASVKSVDWLD DDSSYVVTID
PDNVRPPSGN EIYDIIHRIN VATTVAQIGI WEFNLDEQKL IWDEQMYTLY GCNPKVVSGE
LSQWSDLLHP DDKEEALSAL NHSLTKIAKL DIAFRIITPC GETRHMRAFA RPLRSPTGNV
AKIIGVNYDI GAQKQHQQWL ENGLQSNELF IKVLRETDNA VIITDENVKI KWVNPGFTRI
TGYYLEEILG KNPGHVLQGS QSNPDKIAIM RRAVEKRERF NVEILNYRRD GEHIWLKINS
HPMYLGGKFN GFIAIQSDIT EQKNAELALL KANKIQKAIL DSAHLLMISC DAQGKILTCN
QTVEKALGYT KAELKQSGNI QQFMMQNELI DFMQVSTQRQ GSSLDAFFYL ASQGQVDENQ
WTFVTKNNVQ VPMEVTVTGV MSPDNQVERY LLVGRDISQI KQFEKERRHQ QDLLETTGEM
ANLGGWALNL ETDEVTWSDQ VYRIHELPVG SDVDLSSAMK FYPEDVRPLV QKAIDSSIAA
GKKWDLQVPF ITAKGKHIWV RAVGYAEYQN GRPVVLRGAF QDITEMKKAE EQAKEASRAK
SEFLANMSHE IRTPINGIVG MNDLLLATEL TDKQRHFAEL VHSSSESLLL LINDILDFSK
IEAGKLSIES IYFDLHLLLG NIIDTFASRA QQKGLELVFD LQMDVPQWIT SDPGRIRQIL
NNLLGNAIKF THHGEVIMRV ALEGDNQLKF FVQDTGIGIH EDNQKALFSK FMQVDSSTTR
HFGGTGLGLA ISKQLSELLG GTVGVSSQWQ QGSTFWFTIA PEALNENQIQ FSPLFPEREA
PLQVLLVDDN PTLSTVLGKW LTSNNMVVQH AESASSALKA LRQSHLKMTK IDVALIDSNL
AGINGIELTK AIRSNDLFAK LHIILMTPHD WLEKGTSSQL ANPVSYIAKP VKPETLKGAF
TGALENGDNT KLITALPETK LLNKYRQAPH ILLVEDNFIN QQVVIEMLKK LHCSVQVAEN
GQEAIHTLEE SEAKFDAILM DCQMPIMDGY EASRTIRKSQ HSNYASTLPI IALTANAMKG
DKEACLAAGM NAYLTKPIVL TELRAELIKW LA
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