Gene Patl_3553 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3553 
Symbol 
ID4175332 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp4271250 
End bp4271966 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content46% 
IMG OID638056582 
Producthelix-turn-helix, type 11 
Protein accessionYP_663109 
Protein GI109899854 
COG category[K] Transcription 
COG ID[COG2378] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCAAAG CCGAAAGACT CAACGATATT GTTCATCACT TACGCAGAAT GCACCAAGCA 
GTGACGGCGC AAACCTTAGC TGAAACATTA GAAGTAAGTC ACAGAACCAT TTATCGCGAT 
ATACAAGACC TGATTGATTC CGGTGTGCCG ATTTTGGGTG AAGCGGGTGT AGGGTACGTG 
ATTGATAAAA AGTACCATTT ACCTCCCATC ATGTTTGATG CCGATGAACT AGAAGCAATC 
GCCTTGGGCA TTGGTATGGT GAGTAACTGG ACTGACGAAA AGTTCGCTGA AAAAGCGCAA 
AGTGCTTATC GCAAAATACA AGCAACTCTG CCCGCCCCTT TAATCAACGA GCTTCATCAA 
ATCAGTACGT TTTCGGCCCC CAGTCGCTAT AAAATCCCAT GGCAGGTGAA CTTCACCGAA 
GTGCGAGAAT GCATAAGGCG CAAGCACCTT GTAAGCTTTA CCTATACAGA TTTAAGCGAC 
CAACAAAGCC AGCGTACTAT CCGGCCTCTG GCGTTAATTT CTTTTAGTCC TATTTGGCTA 
CTCGCCGGCT GGTGCGAACT GCGCGGTGCG TATAGAAACT TTCGCCTCGA CCGAATATCC 
GAATTTACAA AACTCAATAC ACGCTACCAA GACGAAAAAG ACAAGAGCCT CGCAACCTAC 
CTTAAGATGG TAAAAGATGA GGAAAACAAA GCGAACAAGA GCAATGGAGA TTGTTAA
 
Protein sequence
MRKAERLNDI VHHLRRMHQA VTAQTLAETL EVSHRTIYRD IQDLIDSGVP ILGEAGVGYV 
IDKKYHLPPI MFDADELEAI ALGIGMVSNW TDEKFAEKAQ SAYRKIQATL PAPLINELHQ 
ISTFSAPSRY KIPWQVNFTE VRECIRRKHL VSFTYTDLSD QQSQRTIRPL ALISFSPIWL 
LAGWCELRGA YRNFRLDRIS EFTKLNTRYQ DEKDKSLATY LKMVKDEENK ANKSNGDC