Gene Patl_3542 details

Gene Information

• Locus tag: Patl_3542
• ID: 4175321
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: -
• Start bp: 4251522
• End bp: 4253294
• Gene Length: 1773 bp
• Protein Length: 590 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 638056571
• Product: response regulator receiver modulated diguanylate cyclase/phosphodiesterase
• Protein accession: YP_663098
• Protein GI: 109899843
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain; [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGATTG AAGGAAAGGT TAAGATTCTA GTCAGTGACG ATGATCTCAC TGCACGGATC 
TTAATGAGGG AAACACTCGC CAGTGACACC ATTGAAGTAC TAGAAGCTGA AAATGGTAAA 
CGCGCGATAG AGCAATTTGA AGAGCATAAT CCTGCCTTGC TGTTGCTAGA TGTTTCCATG 
CCTGAAATGA ACGGTTTTGA CGTCTGTGAA TATATTCGTA CGCATAAAAA TGGTAAGCAC 
ATCCCCATCA TTATGGTGAC GGGCTCAGAT GATATTGATT CAATCCATAA ATCCTATGCG 
GTAGGCGCCA CAGACTTTAT CGCCAAACCG ATTAAATGGC CCATTTTGGG AGAGCGAGTT 
AAGTATATTT TACGCGCTAG TCAAGCGTTC GCTGATTTAG TCACTCAACA ACAAGAATTG 
CATCAGCTAG CGTTTTATGA CTCGTTGACA GGGTTGCCCA ATCGTCAATA TTTGATGCAA 
GATTTAAAGC GCTTTTTAGC TATGGCCAAG CGCAACAAGT ATCAAGCCGC GATGCTGTTT 
ATAGATTTAG ACCGCTTTAA GCGAATTAAC GATACCATGG GTCACAGCTA TGGTGACAAG 
CTGTTACGCA AGGTCGCACA TCGCTTACAA GCTAATTTAC GAGACAGTGA TACATTTGCG 
CGCGTCGCCG CTGAAAAAAA CAAGGAAGCC CCTCAATTAT CTAGCTTTGG TGGTGACGAA 
TTCACTATTT TCCTTAGCCG TTTGAATGAT CCAAATGAAG CCATGCTGGT GGCGGAGCGG 
GTTATTCGTA GTTTCAGTAC ACCATTCCAG TTAGAGCAAT ACGAAGTGGT GGTAACCCCC 
AGTATTGGCA TTTCGACATT TCCTAATGAC GGTGAAGATG CTGAAACACT GCTAAAAAAT 
GCTGATACTG CTATGTATTT TGCCAAGCAA TCTGGCCGCT GCTGTTACAA ATTTTACCAA 
GACTCCATGA ACTCTAAAGC CGCGGCACGC CTGCAATTAG AGCAAGATCT TCGACAAGCA 
CTAAAAAGTA ACGAAATCGT ACCCTTTTAT CAGCCACAAG TGTGTGCCAA AACGGGGCGC 
ATTGTTGGGG TTGAGGCGCT TGTTCGTTGG TTACCGTTAA AGGGAGGGAT TATTCCTCCT 
GATGAGTTTA TTCCTATTGC TGAAGAAACA GGCCTTATCA ATGAACTGGG AAGACTCGTG 
CTTGAGCAAG GGTGCTATCA AGCCAAGCAA TGGTTAGATT CAGGTCACTC AGTGCGTATG 
GCCATCAATG TATCTGCGCA TCAATTTAGG CAGCTCGATT TTACCCAAAC GGTTGCTAAG 
GTTTTAGCCC AGAGTCAGCT TCCTCCCTCG TTATTAGAAT TGGAGTTGAC AGAGTCGGTG 
ATCATGAGTG ACGCCGAGGA AAACATCGCC CGTCTGGTTG AGCTTAAATC CCTTGGGGTT 
TCGCTTGCCG TAGACGATTT TGGGACAGGG TACTCTTCGT TGAGTTATCT CAAGCGTTTT 
CCAATCGATA TTCTCAAAAT AGATCGCTCT TTTATGTGTG ATGTAAATTC GGCCCCAGAT 
GATGTGGCGA TAGTGGAAGC CATTTTGGCG CTGGCTGAGA GCTTAACACT CGGGGTTATC 
GCCGAAGGTA TAGAGTACTG CAGTCAAATT ACCATCCTCA AAAACACCAG TAATTTACTG 
TTACAAGGCT ATCTATTTTC TAGGCCTGTA GCGGCAGATT ATATTGGTCC TTTGCTTAGC 
CAAGACTTTA CGTATCTGAT GTCAGAATTA TGA 

 

Protein sequence

MSIEGKVKIL VSDDDLTARI LMRETLASDT IEVLEAENGK RAIEQFEEHN PALLLLDVSM 
PEMNGFDVCE YIRTHKNGKH IPIIMVTGSD DIDSIHKSYA VGATDFIAKP IKWPILGERV 
KYILRASQAF ADLVTQQQEL HQLAFYDSLT GLPNRQYLMQ DLKRFLAMAK RNKYQAAMLF 
IDLDRFKRIN DTMGHSYGDK LLRKVAHRLQ ANLRDSDTFA RVAAEKNKEA PQLSSFGGDE 
FTIFLSRLND PNEAMLVAER VIRSFSTPFQ LEQYEVVVTP SIGISTFPND GEDAETLLKN 
ADTAMYFAKQ SGRCCYKFYQ DSMNSKAAAR LQLEQDLRQA LKSNEIVPFY QPQVCAKTGR 
IVGVEALVRW LPLKGGIIPP DEFIPIAEET GLINELGRLV LEQGCYQAKQ WLDSGHSVRM 
AINVSAHQFR QLDFTQTVAK VLAQSQLPPS LLELELTESV IMSDAEENIA RLVELKSLGV 
SLAVDDFGTG YSSLSYLKRF PIDILKIDRS FMCDVNSAPD DVAIVEAILA LAESLTLGVI 
AEGIEYCSQI TILKNTSNLL LQGYLFSRPV AADYIGPLLS QDFTYLMSEL