| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3523 |
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| Symbol | |
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| ID | 4175302 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4229399 |
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| End bp | 4230814 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056552 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
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| Protein accession | YP_663079 |
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| Protein GI | 109899824 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCCGG TTTCATTGGC GTGGATTGCG CAGCAAGTGC AGGGCGAAAT TATTCGCAGT
GAAAACAGTA TTGCTGAAGA CGCCATAATT CAGGGTGTCA GCACTGACAC GCGTCATATA
AATTCAGATG ATTTATTTAT TGCCTTGAGC GGACCAAATT TCGATGGCCA TAAATTTATC
GAACAGGCTC AAACAAGTGG GGCAATAGCG GTAGTTGTTA GCCGTCAAGT GGAGACCCCG
TTAGCCCAAA TATTAGTTAG TGATACCAAA GCCGCTCTGG GACTATTGGG ACAGGCAGTA
AAGCGTGAGG TAGCACCAAA GACGGTGGCT ATAACCGGTA GCAGTGGCAA AACCACAGTC
AAAGAAATGG TTGCTGCTAT TTTATCTCGG CGCGGTAAAG TGCTCGCCAC GAAGGGCAAT
TTCAACAACG ATATTGGTGT GCCTCTTACC TTATTGCGTC TTGAAGCGCA GCACGAGTTC
GCCGTGGTTG AGTTAGGTGC TAACCATCTT GGGGAAATTG CTTATACCAC TGAGTTGGTA
AAGCCAGATG TGGCTACAAT CGTTAACGCT GCTGCTGCCC ACCTTGAAGG ATTCGGTAGC
TTATTAGGTG TGGCACGCGC TAAAAGTGAA ATTTTCAAAG GGTTAGGAAA AGACGGGCTA
GCTATTTTCA ACGCCGACAG CCAATTCTAC GCGTTCTGGC ACGGTAAGTA TGAACATCTA
CGTAATCAGC GTTTTTCGAC CCAAGGTGAA GCCGACTATT ACGCACAGGA TGTCGTACTT
GGTTTAAGTG GTTGCGCAGA CTTTCTGATG GTCACGCCCA TCGGTAAGGT GTCCATCACT
TTGCCTTTGC CTGGTATTCA TAACGTCAGC AATGCCTTAG TTTCTGCTGC ATTGGCGATA
GAAGTAGGTG CTAACTTACA AGATGTGCAA GCTGGGTTGC AGTACATGGC ACAAGTAAGT
GGTCGCTTAC AAGTTAAGCA GCTAAGCGGT CAAGTTAAAG TACTTGATGA CACATACAAC
GCTAACGTGG CCTCTGTAAA CGCAGCCATT GATTTACTTG GCAGCTTTGC TGGGCGCAAA
ATTCTAGTGC TAGGCGATAT GGCTGAACTA GGAGAGCGAG CACGCTTTTA TCATCAGCAA
GTAGGGGAAT ATGCCAAAGA AAAGGGCATA GACGACTTGT ACACTCTTGG CGTGCTCAGT
CAAAGCGCCA GCGATGTGTA TCAAAAGAGC GGTTACCATT TTAGTGATAA AGACAAATTA
GTCGCGGCAT TAGCCGAGCA TTTAGCAGCG GAGAAACGAG ATATCAGCAT TTTAGTAAAG
GGCTCCCGTA GTGCGCGTAT GGAGTTGGTA GTGGAAGCTT TGGAGGCATC CCCCGTGGGA
AAGTTTGAAC GCTTTAGGGA GCTAATGGCA TGTTGA
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| Protein sequence | MIPVSLAWIA QQVQGEIIRS ENSIAEDAII QGVSTDTRHI NSDDLFIALS GPNFDGHKFI
EQAQTSGAIA VVVSRQVETP LAQILVSDTK AALGLLGQAV KREVAPKTVA ITGSSGKTTV
KEMVAAILSR RGKVLATKGN FNNDIGVPLT LLRLEAQHEF AVVELGANHL GEIAYTTELV
KPDVATIVNA AAAHLEGFGS LLGVARAKSE IFKGLGKDGL AIFNADSQFY AFWHGKYEHL
RNQRFSTQGE ADYYAQDVVL GLSGCADFLM VTPIGKVSIT LPLPGIHNVS NALVSAALAI
EVGANLQDVQ AGLQYMAQVS GRLQVKQLSG QVKVLDDTYN ANVASVNAAI DLLGSFAGRK
ILVLGDMAEL GERARFYHQQ VGEYAKEKGI DDLYTLGVLS QSASDVYQKS GYHFSDKDKL
VAALAEHLAA EKRDISILVK GSRSARMELV VEALEASPVG KFERFRELMA C
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