Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3517 |
Symbol | ddl |
ID | 4175296 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 4221977 |
End bp | 4222933 |
Gene Length | 957 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638056546 |
Product | D-alanine--D-alanine ligase |
Protein accession | YP_663073 |
Protein GI | 109899818 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGACTCTGG CGAACGCAAC ACACACTAGT GCAATAGATA TTGCACGCTT TGGAAAGGTC GCCGTGATGT TTGGCGGGCG CTCTGCCGAG CGTGAAGTAT CCCTGCGCTC AGGGCAAGCT GTGCTTAGCG CATTGATCAG CGCTGGTGTA AACGCCCATG GCTTTGATCC TGCTGAGTCT GAGCTACATC AACTTGTGGA ACAGAAATTT GATCGCGTGT TGATCATGCT TCATGGCCGT GGCGGTGAAG ACGGCTCGCT ACAAGGCGCA TTACAGCAAA TGAACATGCC TTATACCGGT ACGGGCGTCT TAGGTTCTGC CTTATGCATG GATAAAATAC GCAGTAAACA GGTGTGGCAG AGTCTGGGAC TCCCAACAGC CAATTACGAA ATTGCGGATA AAAGAGACTT TAATGCCGCG AACTGCAGCG ATATAATGTC CCGCTTAGGA GATCTGGTTA TGGTCAAGCC TGCTCAAGAA GGTTCGAGTA TCGGCATGGC CAAAGTGTCA AATGCGCAAC AACTCGCCGC AGCGATCCAA CAGGCTTTTG AATATGACGA TAAAGTGTTG TTGGAGCAAT TCATCCAAGG TTCAGAGTAC ACCGTTAGCC TATTAAATGG TGAAGCGATG CCCTCGATCA GTATGTCGAC CCCACGAGAC TTTTATGACT ATGAGGCTAA GTACCAGTCT AATACGACTG AGTATTTTTG CCCTAGCGGT TTGCCTGCGG AACAAGAAGG GCTGTTAGCG CGTCTTGCGT TGGACGCATT CGATGCCGTC GCAGGCTCAG GTTGGGGAAG AGTAGATTTT ATGCAGGATA TGTTGGGGCA GTTTTATTTA CTAGAAGCGA ACACAGTACC GGGTATGACG GAAAAGAGTT TAGTGCCTTT AGCGGCCAAG CAAGCAGGGT TGAGCTTTGA GCAACTTTCC TTAGCTGTGT TGGCAACGGC AGGTTAA
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Protein sequence | MTLANATHTS AIDIARFGKV AVMFGGRSAE REVSLRSGQA VLSALISAGV NAHGFDPAES ELHQLVEQKF DRVLIMLHGR GGEDGSLQGA LQQMNMPYTG TGVLGSALCM DKIRSKQVWQ SLGLPTANYE IADKRDFNAA NCSDIMSRLG DLVMVKPAQE GSSIGMAKVS NAQQLAAAIQ QAFEYDDKVL LEQFIQGSEY TVSLLNGEAM PSISMSTPRD FYDYEAKYQS NTTEYFCPSG LPAEQEGLLA RLALDAFDAV AGSGWGRVDF MQDMLGQFYL LEANTVPGMT EKSLVPLAAK QAGLSFEQLS LAVLATAG
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