Gene Patl_3508 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3508 
Symbol 
ID4175287 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp4211277 
End bp4211933 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content48% 
IMG OID638056537 
Productribose-5-phosphate isomerase A 
Protein accessionYP_663064 
Protein GI109899809 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0120] Ribose 5-phosphate isomerase 
TIGRFAM ID[TIGR00021] ribose 5-phosphate isomerase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.846939 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCAAG ACGATAAGAA GAAAGCAGTC GCCCAAGCAG CGGTACGATA TGTAGAGCAA 
GACTCCATAA TAGGCGTTGG TACTGGCTCT ACTGTCAATT ACTTCATTGA GGCCTTAGCG 
CCAATCAAGA ACGATATAGT CGGTGCGGTT TCCAGCTCAG AAGCATCAAC AGAACGTTTA 
ACAGCGTTAG GTATTGAAGT GTTTGATTTG AACTCGGTTG ATCAATTATC AGTGTATGTT 
GATGGCGCGG ATGAAATCAC TGAACACCGA CATATGATTA AAGGCGGGGG TGCGGCTTTA 
ACTCGTGAGA AAATTGTTGC AGCGGTAGCA CAGAAGTTCG TCTGTATCAT CGACGATACC 
AAAAACGTGG GCGTATTAGG TGCCTTTCCA CTCCCCGTTG AGGTTATCCC TATGGCGCGC 
TCATACGTCG CTAGGGAGAT TGTAAAGCTC GGTGGCGATC CAGTGTATCG CCAAGGTGTG 
GTGACCGACA ATGGTAACGT CATCCTAGAC GTACATAATC TGAAAATACT GAATCCTGTA 
GAGCTAGAGC GACAGTTAAA CAACATTGTC GGTGTTGTCA CTAACGGCTT GTTTGCAGCC 
CGAGGGGCCG ACGTTGTGCT CACAGGCAGC GAGAGCGGTG TTCAAGTAAA CGAGTAA
 
Protein sequence
MNQDDKKKAV AQAAVRYVEQ DSIIGVGTGS TVNYFIEALA PIKNDIVGAV SSSEASTERL 
TALGIEVFDL NSVDQLSVYV DGADEITEHR HMIKGGGAAL TREKIVAAVA QKFVCIIDDT 
KNVGVLGAFP LPVEVIPMAR SYVAREIVKL GGDPVYRQGV VTDNGNVILD VHNLKILNPV 
ELERQLNNIV GVVTNGLFAA RGADVVLTGS ESGVQVNE