| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3466 |
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| Symbol | |
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| ID | 4175243 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4158456 |
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| End bp | 4160612 |
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| Gene Length | 2157 bp |
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| Protein Length | 718 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056493 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_663022 |
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| Protein GI | 109899767 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACAAAA AAGTAAAGCC CTTCATGCAA TCTACCCTTG CCCTATGCGT TAGTCTATCG
CTTGTTCCCC ATGCTTACGC TCAAGTTACT GACACCCGCG CCTCGATACA AGCTCAAACA
AATGATCTAG AAATTATCTC TATTTCTGCT CGTGGTCGAA CAGAGTCCAT TCAATCGGTG
CCTGATTCAG TTACCGCGTT TTCATCCGAT ATGATACAAA GCGCACGAAT TGCTAATTTC
AGAGATGTAG CAAACCTAAC ACCTAACCTA ACGCAATTAG ATAATTTCCG CCCAGGTCTA
TCGCGCATCA CTATTCGTGG CTTGATCACA CCTCAAGTGG GCGATCCCCC GCTTGCTTTC
GTGGTGGATG GCGTCACCGC ATCTGATATT GAATTTATCA ACCAAGATTT AGTAGACGTT
GAGCGCATTG AAGTGATGCG CGGCGCCCAA GGTGCTTTAT ATGGCCGCGG AGCCGTGGGC
GGTGCAGTGT TAATCACCAC AAAACAACCC ATTGAAGACT TAGAAGGCAG TGTAAAAGGG
TCCTACAGTA ATGGGAATGC CTATCATCTA AGCGGTGTAC TATCCGGTTC GTTGAACGAA
GAAGACAGCG CCTATTTTAG AGTAGGCGGT TATACCAAAA GCAGTGACGG CTTAATCGAT
AACGCGTTTT TAGACGAGGA GGCCGATGCC TTAGATGAGG ACTCAGTCTT TGGACAATTG
CAATTTGATA TATTCGATGA CACCCGCTTA AACATTAAAA GCAGATACAC CACCAGCACG
GCTGGATTTG CGTATTATCA AGGTGTGACC GCTGACACCA TCGAAGATTT TTCCATCGAC
ACCTCGCAAA ACATAGCAAA CCGCGACGAG CGCGATGTGT TCGAGATAAG TGCCAAACTG
TCACAGGATT ACGCATTGGG TACCTTTGAT TTCATCACAG CTTACAGTCA ATCCAAGAAC
GATCATTTCT ACGACGGCGA CTACTCTGCT GATGCCACTT TTATCGATGA AGCGGACTTA
TTTCGCGCTC CTTTTGGCAC TGCGGGTGAG TCAGACGTAG AATCATTTAC GGTTGAAAGC
CGCTTCACCT CGCAAAATCA GCAACATTTA CGCTGGGCGG TATCTTTGTT TTATCAAGAC
AGGCAACGGG ACACAGTTGT GAGCTTTTTT GATGATTTTG CCGGCGACGC TCCCCGTAAC
CGCAGCGACT TCACTGACGA AGAGAAGTAC TTAGTTATTG CCGACAACAA CAGCAGCAAA
GCGTGGGCTA TTTCTGGCCA AGTAAACTAT GACATTACCG ACAAACTGGA ATTGACCACT
GCCTTACGTT TTGATCAAGA CAAACGCGAG TCGTTTGCTC CTAATTTTGC TGATGACACC
TTCGCGCAAA AAACCTTTAG CCAGTCGCAG CCAAAGGTCA CCCTTGCTTA CCAAGCAATG
CCAAATTTTT TGGTTTATTC AAGTTACTCT AAAGGCTTTC GCAGCGGTGG ATTCAATGAG
CCAGCAGAGG GCATAAGCCG TACATTCAAC AAAGAAGTAT CAGACAGCGT TGAAGGTGGC
TTTAAAGCCA CCTTGTTTGA AAACTCGGTG ACCTTAAACG GTGCTGCGTT TGCGATCGAC
CAAGATGATG CGCAAGTCAC GCAATTCAAT GTACGCACTT TTACACTTGA AAACCTCGCC
ATTGATCGTG TTGAAACCCG CGGAGTTGAG CTTGAACTTG GCGTGGCAGC GACACAGAAC
TTGGATATTC GCTTCAGCGC AGGCCTGATT GATTCTGAAA TTAAAGCGTT CTCACGCCAG
CCTTCGCTTG AGGGAGAAAC CATGGTGTGG GTGCCTGACT ACAACTTAGC ATTGTCGGCC
AACTACCTGA CTGAGCTAAA CGATACTTGG TCACTCACCT CAAGCGCGTC ACTGCAAGTG
GAAGGGCCTA AGTCATTCGA CATTACCCAG CCGCAAATTC GTTCGTCTCA GTACCGCTTC
ATCAATGCCA ACCTAGGATT ACGCAGCGAA CAATGGACAA TTCAATTGTT TGTGAATAAC
TTAACCGATG AACGTGCGAT CGAGGACATT TTTATATTAG ACGATGGTGT TACAGAGTTT
GCTCGCCAGC CTAATAAACC TCGCACTTAC GGGATTGAAG CTGCATACCG CTTTTAG
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| Protein sequence | MHKKVKPFMQ STLALCVSLS LVPHAYAQVT DTRASIQAQT NDLEIISISA RGRTESIQSV
PDSVTAFSSD MIQSARIANF RDVANLTPNL TQLDNFRPGL SRITIRGLIT PQVGDPPLAF
VVDGVTASDI EFINQDLVDV ERIEVMRGAQ GALYGRGAVG GAVLITTKQP IEDLEGSVKG
SYSNGNAYHL SGVLSGSLNE EDSAYFRVGG YTKSSDGLID NAFLDEEADA LDEDSVFGQL
QFDIFDDTRL NIKSRYTTST AGFAYYQGVT ADTIEDFSID TSQNIANRDE RDVFEISAKL
SQDYALGTFD FITAYSQSKN DHFYDGDYSA DATFIDEADL FRAPFGTAGE SDVESFTVES
RFTSQNQQHL RWAVSLFYQD RQRDTVVSFF DDFAGDAPRN RSDFTDEEKY LVIADNNSSK
AWAISGQVNY DITDKLELTT ALRFDQDKRE SFAPNFADDT FAQKTFSQSQ PKVTLAYQAM
PNFLVYSSYS KGFRSGGFNE PAEGISRTFN KEVSDSVEGG FKATLFENSV TLNGAAFAID
QDDAQVTQFN VRTFTLENLA IDRVETRGVE LELGVAATQN LDIRFSAGLI DSEIKAFSRQ
PSLEGETMVW VPDYNLALSA NYLTELNDTW SLTSSASLQV EGPKSFDITQ PQIRSSQYRF
INANLGLRSE QWTIQLFVNN LTDERAIEDI FILDDGVTEF ARQPNKPRTY GIEAAYRF
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