| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3384 |
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| Symbol | |
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| ID | 4175161 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4059136 |
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| End bp | 4061253 |
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| Gene Length | 2118 bp |
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| Protein Length | 705 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056415 |
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| Product | hypothetical protein |
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| Protein accession | YP_662944 |
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| Protein GI | 109899689 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACCATTA AAACAGCAGA TATTCAGTTT AACGCTGATG GCACGCCAAT CGCCACGAAT
TTTGATGACG TGTATTTTTC ATCTTTTGAC GGCGCCGCAG AAACCGAATA TGTTTTTTTA
CACAATAATC TGTTGCCTCA GCGTTGGCAG CAATGGTCAA AGCCTACCTT TGTTATTGCT
GAAACAGGCT TCGGTACTGG GCTTAACTTA TTAGTGACAC TGGCTGTATT TAAACAGCAT
TTGGCTCAAC ACCCTGCTAG TACATTTACC CTGCACTATA TCAGTACGGA AAAATTCCCC
CTCACCCATA CAGACTTAGT CCAAGCGCTT AATGCTTTTG TTCAATTTGA AGATGACGCT
AAGGCATTAA TTGCTCAATA TCCTATGCCA CTCGATGGTT GCCATCGTAT GTCTTTTCTA
AACAACCGCG TCATTGTCGA TCTATGGCTA GGTGATATAC ATGACTCATT ACCCCAATGG
CACACCAATG AAAACGGTTT AGTGGACGCC TGGTATTTAG ATGGATTTGC CCCCAGCAAA
AACCCACAAA TGTGGTCCCC CCAGCTGTTT GAACAAATGG CCCGCTTAGC CAGTAACGGC
TGCACCTTCG CTACCTTTAC CGCTGCTGGT TTTGTTAAGC GTGGCTTACG TGATGCAGGC
TTTGAAGTAG AGAAACGCAA AGGACACGGC CGCAAGCGAG AAATGCTTGC AGGCATTATC
GCCAGAGAGC TTGAAACGAA AGTCAATCGT CAGCAAGCCC GTTATTATCA ACGCGGCGCT
TATATGAATT CTACGTCTGT AAATACTCGC TGTGCAGAAA ATCACGCGCA AACAGCTTTA
GCGAGTAAGC CCAAAGTCGC GATTATCGGA GCCGGTATTG CAGGGGCCAG CATGGCCTAT
GCCATGGCAA AAAAAGGCTA TGACTGTGAT ATTTATTTTA ACGATGCGAC CCCTGCACAA
GGCGCATCGG GAAATCCCCA AGCCGGGTTT TATCCACAAC TCAATGTGGA TGCGAGCCAT
GCCAGTCAGA TTAATGCTCA CAGTTTTGTG TATGCCGCCA ACCAGTATCG ACAGCTTCAG
TCTCAAGGTT TTCACTTCGC GCACCAATGG TGCGGTGTGT TGCAATTGGG TTTTAAGCCT
GCGCTAGCAG AGCGTTATGC AAAACTGACC GAAAGCCAAT TATGGCCCGG TGAGCTAGTA
AGGTATGTTA AGCCTAGCGA AGCCGCACAA TTAGCCAACT GCGAGATGCC ATACAGTGGT
TTGTTTATGC CACTCGGCGG TTGGATAGAT CCAGCACAAC TGGTCGATGC CCTATTCGAT
GCTGCAGCGA AATTGAGTCA GGTGAGGTTA TATAGCCATC ATGCACTCAA CGGCATAGAG
CAAAAAAATG TCTCAATTAC CGCGCAAGAG AACACACGCT GGCAATTACA TTTTGAAGCG
TCAGAGGCCA CTTCTGGAAT GAATAAAAAT ACTAGCTTAG CCCAGGCTGA CATTGTGATT
TATGCCACCG GTGCACAAAG TCATGACATA GCAGCGCTCG CGGATTTTCC TCTGCGCATG
GTGCGAGGCC AAGTTGAAGC GGTGCCGACT CAAACGGCGC TTAGTAAATT AAATACCGTG
CTATGTCATA AAGGCTATTT AACCCCGGAA TATAACGGCC AGCATGCGCT AGGCTCAACC
TATGTGAAAA ATGATTTAAG CACTGATTAC CGCCTAAGCG AGCAAGACAA AAATTTAGCC
ACCCATTATC AATCACTGTC AGACTGCCAA TGGGCGCAAG AAGTGGTGGG GAACGCACAA
GGCCGAGCAG CAGTGCGTTG CAGTTCGCCG GATCACTTAC CTTTGGTGGG GGCATTAGCA
GATATTGAGA AGCAAAAGAA AGAATTAAGC GATTTGTACA AAGCCCTGCC CTTAAGCTAT
TACCCAAAAG GCAGCAATAT GAATAACGTA TTTGTTCTCA CAGGGCTTGG CTCTCGTGGG
TTAACTACGG CGCCGTTAAT GGCTGAAGTA CTCGCCAGCC AAATCAGCGG ACAGCCACTG
CCAATGGCAA ATGATTTATT AAACACCCTA AACCCGAATC GTTTTTTAAT CCGCCAGCTG
ATCCGCCGAG AAGTTTAA
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| Protein sequence | MTIKTADIQF NADGTPIATN FDDVYFSSFD GAAETEYVFL HNNLLPQRWQ QWSKPTFVIA
ETGFGTGLNL LVTLAVFKQH LAQHPASTFT LHYISTEKFP LTHTDLVQAL NAFVQFEDDA
KALIAQYPMP LDGCHRMSFL NNRVIVDLWL GDIHDSLPQW HTNENGLVDA WYLDGFAPSK
NPQMWSPQLF EQMARLASNG CTFATFTAAG FVKRGLRDAG FEVEKRKGHG RKREMLAGII
ARELETKVNR QQARYYQRGA YMNSTSVNTR CAENHAQTAL ASKPKVAIIG AGIAGASMAY
AMAKKGYDCD IYFNDATPAQ GASGNPQAGF YPQLNVDASH ASQINAHSFV YAANQYRQLQ
SQGFHFAHQW CGVLQLGFKP ALAERYAKLT ESQLWPGELV RYVKPSEAAQ LANCEMPYSG
LFMPLGGWID PAQLVDALFD AAAKLSQVRL YSHHALNGIE QKNVSITAQE NTRWQLHFEA
SEATSGMNKN TSLAQADIVI YATGAQSHDI AALADFPLRM VRGQVEAVPT QTALSKLNTV
LCHKGYLTPE YNGQHALGST YVKNDLSTDY RLSEQDKNLA THYQSLSDCQ WAQEVVGNAQ
GRAAVRCSSP DHLPLVGALA DIEKQKKELS DLYKALPLSY YPKGSNMNNV FVLTGLGSRG
LTTAPLMAEV LASQISGQPL PMANDLLNTL NPNRFLIRQL IRREV
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