| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3342 |
|---|
| Symbol | |
|---|
| ID | 4175119 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4007281 |
|---|
| End bp | 4008183 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638056373 |
|---|
| Product | prepilin peptidase |
|---|
| Protein accession | YP_662902 |
|---|
| Protein GI | 109899647 |
|---|
| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1989] Type II secretory pathway, prepilin signal peptidase PulO and related peptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.501054 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCAA TTTTTCAGCT GATGGCTGAC TCTCTCATTT TTTTCCTCGG TTTCGTTTTT
ATCATTAGCT TGATGATAGG TAGCTTCTTG AATGTGGTTA TTTATCGCTT ACCCATTATG
ATGGAGCGCA GCTGGAAAGC GGATTTTCAC GCGCACTTTG ATACTGACAC AGCGCTCGAA
AATACGCCTA GCAAGGCACC TACTGAGCCT GCAAATTTTA ACCTTGTGAA ACCTGATTCG
ACCTGTCCAA ACTGCCAGCA TAAAATTCGG GCGTGGGAAA ATATCCCGGT GCTAAGCTGG
TTGTTGCTTA GAGGGAAATG CAGCCAATGT CAAAACGCTA TTTCAGTTCG TTACCCTCTT
GTTGAGCTAG GCACTGCATT TTGCTCCGTG TGGATAGCCT GGCATTTTGG TTATTCTTGG
TCAGCGCTTG CAGCCGTGGT GCTGACTTGG GTTTTGGTTG CGCTGATTTT TATCGATATT
GATACCATGT TGTTGCCTGA CCAGCTCACG CTACCGTTAC TGTGGATGGG ATTACTGTTC
AGTATTATTA ACCCTGACGT AACACCCACA GATTCGATCA TAGGGGCGAC CACAGGCTAT
TTAAGTCTTT GGTCTGTGTA TTGGGCATTC AAGTTACTCA CAGGTAAGGA AGGCATGGGG
TATGGAGACT TCAAACTACT GGCTGCGCTT GGTGCTTGGT TGGGATGGCA GTATTTGCCT
ATCGTTATCC TCATGTCTTC ATTGGTTGGC GCTGTTATTG GAATTAGCAT ATTGACAATT
CAGGGCAAGG ACAAAGGTCA AGCGATTCCC TTTGGACCGT ATTTGGCCAT TGCTGGTTGG
CTAACCTTGT TATACGGAGA TTGGATTTCT GACTATTACT GGCAGTGGGT TGGCATACGA
TGA
|
|---|
| Protein sequence | MDAIFQLMAD SLIFFLGFVF IISLMIGSFL NVVIYRLPIM MERSWKADFH AHFDTDTALE
NTPSKAPTEP ANFNLVKPDS TCPNCQHKIR AWENIPVLSW LLLRGKCSQC QNAISVRYPL
VELGTAFCSV WIAWHFGYSW SALAAVVLTW VLVALIFIDI DTMLLPDQLT LPLLWMGLLF
SIINPDVTPT DSIIGATTGY LSLWSVYWAF KLLTGKEGMG YGDFKLLAAL GAWLGWQYLP
IVILMSSLVG AVIGISILTI QGKDKGQAIP FGPYLAIAGW LTLLYGDWIS DYYWQWVGIR
|
|---|
| |