| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3330 |
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| Symbol | |
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| ID | 4175107 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3993777 |
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| End bp | 3995777 |
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| Gene Length | 2001 bp |
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| Protein Length | 666 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638056361 |
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| Product | transketolase |
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| Protein accession | YP_662890 |
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| Protein GI | 109899635 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0021] Transketolase |
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| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0024244 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTTCAC GTCAACAACT CGCTAACGCA ATACGTGCGC TTAGTATGGA TGCAGTACAA
CAGGCTAATT CAGGACACCC AGGCGCCCCA ATGGGCATGG CGGATATAGC CGAAGTATTG
TGGAACGATT TTTTAAAGCA CAATCCGGCG AATCCAAACT GGGCTAACCG CGATCGCTTT
ATTATGTCTA ACGGCCACGG TTCGATGTTA GTTTACTCAT TGTTGCATTT GACCGGTTAT
GAGTTACCCA TTGAAGAGTT GAAAAACTTC CGTCAATTGC ATTCTAAAAC ACCAGGCCAC
CCAGAGTATG GCTACGCGCC AGGCGTTGAA ACAACCACTG GCCCACTAGG TCAAGGCATC
AGTAATGCAG TCGGTATGGC GATTGCTGAG AAAATGTTGG CAGCGCAATT CAACCAAGAA
AAATTCGATA TCGTTGATCA TTTCACTTAT TGCTTCCTAG GTGATGGCTG TTTGATGGAA
GGTATTTCTC ATGAAGCCTG CTCACTTGCT GGAACATTAG GTCTTGGCAA GTTAGTGGCA
TTTTGGGATG ACAACGGTAT TTCTATCGAT GGTCACGTAG AGGGTTGGTT CACTGATAAT
ACCCCTGCAC GTTTTGAAGC TTATGGTTGG CATGTTATTG CCGATGTTGA TGGCCACGAC
CCACAAGCGA TTAAAGCGGC AGTTGAAACG GCGAAAGCCA ATACCACTCA ACCGACGTTG
ATATGCTGTA AAACCGTTAT CGGTTTCGGT TCTCCAAATA AATCAGGTAG CCATGATTCA
CACGGCTCAC CATTAGGTGC AGATGAAATC ACTGCGACCC GCGAATTCTT AAAATGGCCA
TATGGGGCAT TTGAAATTCC GGCAGACATC TACGCAGGTT GGGATGCAAA AGCGTCAGGT
TCTGATTTAG AGCAAGCATG GAATGAAAAA TTTGCTGCTT ACGGGAAAGC CCATCCTGAA
TTAGCCGCTG AATTAACACG TCGTCTAAAC GGTGATTTAC CTGCTGATTT CGCTGAAAAA
GCCCAAGCAT TCGTTGAGCA ATCTCAAGAG AAAGCTGAAA ATGTAGCGAG TCGTAAGTCG
TCACAAAACT CTATCGAAGC ATTCGCTGGC ATCATGCCTG AAATTTTAGG TGGCTCGGCA
GATTTGGCTG GTTCAAATCT AACGCTTTGG TCAAAATCTA AAGGCGTCAC AGCTGACGAT
GCCAGCGGTA ACTATTTATA CTACGGTGTG CGCGAATTCG GTATGAGCGG CATCATGAAT
GGTATTGGTT TGCACGGTGG TTTCCGTCCA TTTGGTGCCA CCTTCCTGAT GTTTATGGAA
TATGCACGCA ATGCAGTGCG TATGGCTTCT TTGATGGGGA TTCCAAATAT CTTTGTTTAT
ACCCATGACT CGATTGGTCA GGGCGAAGAT GGCCCAACTC ACCAGCCTAT CGAGCAATTA
GCAAACTTGC GTTTAACGCC TAATTTAGCC ACATGGCGCC CTTGTGACGG TGCTGAAACA
GCCGTTGCAT GGAAATCTGC GCTAGAGCGT AAAGATGGCC CTAGTGCATT GGTGTTTAGC
CGTCAAGGTT TGCCTGGTCA AACGCGTAAC GCTGAACAAC TCGCTAACGT AGCTAAAGGG
GGTTACATCC TCAAAGATAG CGATGGCGAG CCTCAAGTCA TTTTGATTGG TACCGGTTCT
GAAGTCGGTG TTGCCATGGA TGCAGCTGAG CAATTAGCTG CCAAAGGCGT TGCTGTGCGC
GTTGTGTCTA TGCCAAGTAC CTCGGTGTTT GACCAACAAG ATGCGGCTTA TCGCGAATCT
GTATTACCGC GCGCAGTGAC TGCACGTGTA GCCGTTGAAG CTGCTCACGT CGATTACTGG
AGCAAGTATG TTGGTCTTGA TGGTGCAGTC GTCGGAATGT CTACTTTTGG TGAGTCTGCA
CCGGGTGGCG TACTACTCAA GCACTTCGGT ATCACAGCTG ATGCCGTGGC TGAGAAAGCA
CAAGGTTTAT TGAATTCTTA G
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| Protein sequence | MPSRQQLANA IRALSMDAVQ QANSGHPGAP MGMADIAEVL WNDFLKHNPA NPNWANRDRF
IMSNGHGSML VYSLLHLTGY ELPIEELKNF RQLHSKTPGH PEYGYAPGVE TTTGPLGQGI
SNAVGMAIAE KMLAAQFNQE KFDIVDHFTY CFLGDGCLME GISHEACSLA GTLGLGKLVA
FWDDNGISID GHVEGWFTDN TPARFEAYGW HVIADVDGHD PQAIKAAVET AKANTTQPTL
ICCKTVIGFG SPNKSGSHDS HGSPLGADEI TATREFLKWP YGAFEIPADI YAGWDAKASG
SDLEQAWNEK FAAYGKAHPE LAAELTRRLN GDLPADFAEK AQAFVEQSQE KAENVASRKS
SQNSIEAFAG IMPEILGGSA DLAGSNLTLW SKSKGVTADD ASGNYLYYGV REFGMSGIMN
GIGLHGGFRP FGATFLMFME YARNAVRMAS LMGIPNIFVY THDSIGQGED GPTHQPIEQL
ANLRLTPNLA TWRPCDGAET AVAWKSALER KDGPSALVFS RQGLPGQTRN AEQLANVAKG
GYILKDSDGE PQVILIGTGS EVGVAMDAAE QLAAKGVAVR VVSMPSTSVF DQQDAAYRES
VLPRAVTARV AVEAAHVDYW SKYVGLDGAV VGMSTFGESA PGGVLLKHFG ITADAVAEKA
QGLLNS
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