| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3311 |
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| Symbol | |
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| ID | 4175088 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3972904 |
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| End bp | 3973452 |
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| Gene Length | 549 bp |
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| Protein Length | 182 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638056342 |
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| Product | ECF subfamily RNA polymerase sigma-24 factor |
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| Protein accession | YP_662871 |
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| Protein GI | 109899616 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.161259 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGTTTGAGA AGAGTGACGA ACAGTTAATA GAGAAAGCAC TGAAAGGACA TAAAAAATCC
TGGTTTAGTC TACTCAAACG CTACGAAAAG CCTGTTTATC ATTACGGGCT GCGCATGACC
GGGAATAACG CTGACGCGCT GGATCTGCTG CAAGATGTGT TTATTTCGGT ATTTCGCAAT
CTTGCCACTT ACCGGGGCGA TGGGAGTTTT AAAGGCTGGT TATTTAGAAT TGCTCACTAT
CGTTGCATCG AGTTTTATCG CCGTAAGCGC CCGATGCAAG GGTTTGATGA TGCACCGGAC
ATACCCTGCG ACACCGCACC CGTTGACCAA TATATAGAGA ACACACAGCG TAATGCGCAA
TTGGTCAGTG CGATGCAGCA ATTGCCTTTG GCACAAAAAT CAGTGATAGA GCTGAAATTT
TTTGGGCATT TTACCTTTGA AGAAATCGCT GAACAAACGG GCATGTCGGT TAATACGGCA
AAGTCTCGTT TGTACAGCGC GTTATCTAAA ATGAAAACCT TAATGGAGGT GGATTATGTC
GAACTATGA
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| Protein sequence | MFEKSDEQLI EKALKGHKKS WFSLLKRYEK PVYHYGLRMT GNNADALDLL QDVFISVFRN
LATYRGDGSF KGWLFRIAHY RCIEFYRRKR PMQGFDDAPD IPCDTAPVDQ YIENTQRNAQ
LVSAMQQLPL AQKSVIELKF FGHFTFEEIA EQTGMSVNTA KSRLYSALSK MKTLMEVDYV
EL
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