| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3272 |
|---|
| Symbol | |
|---|
| ID | 4175049 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 3924326 |
|---|
| End bp | 3925384 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638056303 |
|---|
| Product | LacI family transcription regulator |
|---|
| Protein accession | YP_662832 |
|---|
| Protein GI | 109899577 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAATC ACGGCTATCG AACAAGAGAG AATTTTTTGG CTAAGTTAGG CATTAAGGAC
ATTGCAGCTA TTTCTGGGGT ATCCCCAGCC ACAGTGTCGC GGACACTGCG CAATCCCGAT
ATTGTCAGTG AAGAAACCCG CAAAAAAGTC ATGAAGGCAG TCGAAGAAGG CGGATATACC
CCGAGTCGAT TCGGCGCCAA TCTGCGCACC CAAAAAAGTG GCAATATTAT CGTTGTCATG
CCGGACATCA CCAATCAAGT TAATGCTGGT ATTATCCGCG CGATTGAAAG TGAAGCGCAA
AAAGCCGGTT ATTCTATTTT ACTGGGTGAC ACCCAAGGCT TAGCCGAGCG TGAAAAGCAC
TATGCGAATA TGGCGCAATC GGGCCAAGCA GACGGTGTAC TCTTGTTCAC CTTCCACATG
CCATTTAATC TCAATGAAAA TCAACCTGCG GCCAAACAAC TGCCGCCTAT CGTCAACTCT
TGTGAATCAA TCCCTATCGA AGGTATTAGC AAAGTCATGA TTGACAATAA CGCTGGGGCT
CGTACAGCAG TTGAGCACCT TTTAAGCCTT GGTCACACGC GTATTGCTGC CGTCATGGGC
CCGCGGGACA CACCTAGCAC GCTCGAGCGC TTAGAAGGTT ATCAAGCCGC ACTTTATAAC
GCCGGCATCG AGGTAGACGA GCAGTTAATC ATTCGCGGAG ATTACGGCTT AGATTCAGGC
ATCGGCGCCA TGGAGCAGTT ACTCAAATTG CGACTTAGAC CCACCGCAGT GTTTTGCTTC
AGTGATGATA TGGCCATCGG CGCCATGAGT GTCTTGCAAG AGAATGGTTT TCGCATTCCC
CAAGACATAT CTATCATGGG GTTTGATGAT ATTCGCTACG CTAGGTTAAT GACCCCAGCC
CTGACCACGA TCCACCAGCC CTTGGAAGAT ATAGGCAAGG CCTGTATGGC GCTGTTACTA
GAGCAACTAT CGGGTAAATC TGATCAAGCA AGATACGTTG AATTGCCGTT TGAGCTAATC
GTTCGCCAAA GTACAGGCCC TGCGCCTAAC GATACTTAA
|
|---|
| Protein sequence | MLNHGYRTRE NFLAKLGIKD IAAISGVSPA TVSRTLRNPD IVSEETRKKV MKAVEEGGYT
PSRFGANLRT QKSGNIIVVM PDITNQVNAG IIRAIESEAQ KAGYSILLGD TQGLAEREKH
YANMAQSGQA DGVLLFTFHM PFNLNENQPA AKQLPPIVNS CESIPIEGIS KVMIDNNAGA
RTAVEHLLSL GHTRIAAVMG PRDTPSTLER LEGYQAALYN AGIEVDEQLI IRGDYGLDSG
IGAMEQLLKL RLRPTAVFCF SDDMAIGAMS VLQENGFRIP QDISIMGFDD IRYARLMTPA
LTTIHQPLED IGKACMALLL EQLSGKSDQA RYVELPFELI VRQSTGPAPN DT
|
|---|
| |