| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3270 |
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| Symbol | |
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| ID | 4175047 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3922047 |
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| End bp | 3923453 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638056301 |
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| Product | isopropylmalate isomerase large subunit |
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| Protein accession | YP_662830 |
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| Protein GI | 109899575 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0065] 3-isopropylmalate dehydratase large subunit |
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| TIGRFAM ID | [TIGR00170] 3-isopropylmalate dehydratase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTACCA CCTTATACGA CAAAATATTT CAGGCCCATA TTGTCGATGA AATCGGCGAC
GATGCATTAT TGTATATCGA TCGTCATTTA ATCCATGAAG TTACCTCCCC GCAAGCGTTC
GATGGCTTGG CGCAAAAAGG ACGTAAAGTC CGTCGTCCTG ATCTGACCTT CGCCACCATG
GATCACAGCA TATCAACGCG CTCTCTCGCC ATAGATGCGT GCGGCCCAGC GAACAAACTA
CAACTTCAAA CCCTAGCAGA CAATTGCGAA GCTAACGGCA TTCAGTTGTT CCCTGTGGGT
CATCAAAAGC AAGGTATTGT ACATGTAATG GGCCCTGAAC TTGGCCTAAT CAAACCAGGA
ATGACTGTGG TTTGTGGCGA TTCACACACA GCCACCCACG GTGCTTTCGG CGCACTTGCC
TTTGGTATTG GAACGTCTCA AGTTGAGCAC GTATTCGCGA CCCAAACTCT TAAGCAGAGT
AAAGGTAAGT GCATGCAAGT TAAGGTCAAT GGCGCTCGCC CACTTGGGGT AACGGCAAAA
GACATCATCT TAGCCATTAT TGGTAAAATT GGTCATGCCG GTGCCACAGG ATGCGTTATC
GAATATTGCG GTGACACCAT TGAAGGTTTG AGCATGGAAG AGCGCATGAC AGTATGTAAC
ATGAGCATTG AAGCCGGTGC AAAGGCTGGC TTAATTGCCC CTGACCAAAC CACATTTGAC
TACCTTGCAG GTCGTGAATA TGCGCCAAAA GGCGCAGACT GGGATGCCGC TGTAGCCTAT
TGGAAGACCC TTAAATCAGA TACAGATGCT AAATTTGATA TTGTGGTAGA ACTGGCCGCT
ACAGACATCG CACCACAAGT GACTTGGGGC ACCAACCCAG GCCAAGTGAT TGGGGTCAAT
CAGCCTATTC CTGCGCCAGA AGACTTTAGT GATCCTATCG ACCGTGACTC AGCCGTTAAA
GCGTTGAAAT ACATGGATAT ACAAGCAGGT CAAAAATTAG CAGATCTAAC CGTAAATCAC
GTATTTATCG GCTCATGTAC CAATGGCCGT ATTGAAGATA TGCGTGCGGC TGCCGCGATT
GCTAAGCAAG GCAAAGTCGC AGAGAACGTC ACCGCTATTG TGGTACCAGG TTCTGTGGCA
GTTAAAGCAC AAGCAGAAGC CGAGCAACTC GATAAAATCT TCCTCGATGC AGGCTTTGAG
TGGCGCTTAC CTGGTTGTTC AATGTGCCTA GGCATGAATG ATGACATTCT AAGCCAAGGT
GATCGCTGTG CTTCTACCAG CAACCGTAAC TTTGAGGGTC GCCAAGGCCG CGGTGCTCGT
ACACACTTGG TCAGCCCTGC AATGGCCGCA GCAGCAGCTT TAGCCGGGCG TTTCGCCGAT
ACCCGTGACT TCATTGCCAA CGATTAA
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| Protein sequence | MSTTLYDKIF QAHIVDEIGD DALLYIDRHL IHEVTSPQAF DGLAQKGRKV RRPDLTFATM
DHSISTRSLA IDACGPANKL QLQTLADNCE ANGIQLFPVG HQKQGIVHVM GPELGLIKPG
MTVVCGDSHT ATHGAFGALA FGIGTSQVEH VFATQTLKQS KGKCMQVKVN GARPLGVTAK
DIILAIIGKI GHAGATGCVI EYCGDTIEGL SMEERMTVCN MSIEAGAKAG LIAPDQTTFD
YLAGREYAPK GADWDAAVAY WKTLKSDTDA KFDIVVELAA TDIAPQVTWG TNPGQVIGVN
QPIPAPEDFS DPIDRDSAVK ALKYMDIQAG QKLADLTVNH VFIGSCTNGR IEDMRAAAAI
AKQGKVAENV TAIVVPGSVA VKAQAEAEQL DKIFLDAGFE WRLPGCSMCL GMNDDILSQG
DRCASTSNRN FEGRQGRGAR THLVSPAMAA AAALAGRFAD TRDFIAND
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