| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3268 |
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| Symbol | |
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| ID | 4175045 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3919367 |
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| End bp | 3920926 |
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| Gene Length | 1560 bp |
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| Protein Length | 519 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638056299 |
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| Product | 2-isopropylmalate synthase |
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| Protein accession | YP_662828 |
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| Protein GI | 109899573 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR00973] 2-isopropylmalate synthase, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.983126 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCAACC AAGTCAAAAT ATTCGACACC ACATTACGTG ATGGCGAACA AGCGCTAGCA
GCCAGTTTGA GTATGAAAGA AAAACTACAA ATTGCCTTAG CGCTGGAACG ACTTGGTGTG
GACATCATTG AGGCGGGCTT TCCGGTTTCC TCCCCTGGCG ACTTTCGCTC AGTTCGCAGC
ATCGCACAAG AAGTAAAAAA TGCCACAGTC TGCGGCTTAT CTCGCGCCTT AGAAAAAGAC
ATAGATGCCT GCGGCGAAGC ATTAAGTGTT GCCGACAATT TCAGAATACA CACCTTCATC
GCCACCTCAG ATATTCATGT CGCTAACAAA TTGCGTAAGT CTCAAGACGA AGTCGTCGAG
ATGGCCGTTA ACGCCATTAA GCACGCAGGG CGTTACACTG ACGACATTGA GTTTTCTTGT
GAGGATGCGG GCCGAACCCC GATTGATTAC TTATGCCGCA TGGTTGAGTC AGCGATTAAC
GCTGGCGCGA CGACGGTTAA CATTCCTGAC ACCGTTGGCT ACACCACCCC CACGGAGTTT
GGCGGTATTA TTCAAAACTT ATTTAATCGC GTGCCCAATA TCGATAAAGC GACTATTTCT
GTGCATTGCC ACAACGATTT AGGACTGGCG GTTGCCAACT CGTTAGTCGC AGTTGAGTAC
GGCGCTCGTC AAATCGAATG CACTATTAAC GGTATTGGTG AGCGTGCGGG TAATTGCTCG
CTAGAAGAAA TCGCCATGAT TTTGCAAACC CGTCAAGCCA TGTTAGGCCT GAACACCAAC
ATTCGTAGTC ACGAGATATC TCGCACCTCA AAACTAGTCA GCCAACTATG TAATATGCCG
GTACAATCAA ATAAAGCGAT TGTCGGTGCC AATGCCTTTA GTCATTCTTC GGGGATTCAC
CAAGATGGCG TCTTAAAAGC GCAAAACACT TATGAGATAA TGACCCCTGA AAGTGTCGGG
ATCAATAAAA ACAACTTAAA CCTAACCTCT CGTTCGGGTC GTCACGTTAT CAAGCACCGT
CTTGAGGAAC TTGGCTATAA AGCCGAAGAT TACGACCTAG ATACTTTGTA TGCCTCATTT
GTAAAATTAG CGGATAAAAA AGGCCAAGTG TTCGATTACG ACCTTGAAGC CTTGCTGTTT
TTCGACAAAC AAAAACCTGC TGACGAACAC TACAAGCTAC TTTATTTACA AGCCAGTTCG
GGCAAAGAGA TCATCCCGAG CGCGACGGTG AAGTTACAAG TGGGCGAAGA GGAAATCATC
GAGTCTTGTA CCGGCAACGG CCCAGTAGAT GCCGCCTACA AAGCAATCAT TAAAGTACTA
GGCCATGAAC AACTTGAAAT AGTCGACTTC AAGCTTGATT CAAAAGGAGA AGGCGCTGAT
GCCCTCGCCC AAGTTAGCGT TATTGTTGAA TATAATGGTC GTCGTTTTAA CGGTATTGGT
CTAGCCACAG ATATCGTTGA ATCAGGCGTC AAAGCCCTGA TCCACGTATT GAATAACACT
CATTTAGCCG ATCAAATTGA TCACCAGAAA AAGCAACAAA CACAAACTGC CGGAGTTTAA
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| Protein sequence | MSNQVKIFDT TLRDGEQALA ASLSMKEKLQ IALALERLGV DIIEAGFPVS SPGDFRSVRS
IAQEVKNATV CGLSRALEKD IDACGEALSV ADNFRIHTFI ATSDIHVANK LRKSQDEVVE
MAVNAIKHAG RYTDDIEFSC EDAGRTPIDY LCRMVESAIN AGATTVNIPD TVGYTTPTEF
GGIIQNLFNR VPNIDKATIS VHCHNDLGLA VANSLVAVEY GARQIECTIN GIGERAGNCS
LEEIAMILQT RQAMLGLNTN IRSHEISRTS KLVSQLCNMP VQSNKAIVGA NAFSHSSGIH
QDGVLKAQNT YEIMTPESVG INKNNLNLTS RSGRHVIKHR LEELGYKAED YDLDTLYASF
VKLADKKGQV FDYDLEALLF FDKQKPADEH YKLLYLQASS GKEIIPSATV KLQVGEEEII
ESCTGNGPVD AAYKAIIKVL GHEQLEIVDF KLDSKGEGAD ALAQVSVIVE YNGRRFNGIG
LATDIVESGV KALIHVLNNT HLADQIDHQK KQQTQTAGV
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