Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3232 |
Symbol | |
ID | 4175009 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 3880236 |
End bp | 3881873 |
Gene Length | 1638 bp |
Protein Length | 545 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638056263 |
Product | type II secretion system protein E |
Protein accession | YP_662792 |
Protein GI | 109899537 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.17007 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGTATC TTGCCCAATC GGTGCCATTA AGCGAAGCCG ATGTGCGTTT AGCACATTCT ACGGCAAAAG AGTTAAATTG CTCTTTAGCA TCAGCCACAT CTAGACTTGG CTTGTGTGGT GAAGACACCG TTTTCAGTGC AATAAGCGAG ATTATTCAGT GGCCATTAGT CAGTCAAGTT TCTGAATGCC CACACGCAGA ACAAGTGCTT GCTGCAAGTG TTAGCTTAGG GTTGAGTATT GACTGGTGTT TAGACCATTC AATATTTCCA GTAGTGAACG AGTCGATAAT AGATGTCTAT ACTGATGATC CCGTGGCCCA ATTCCCATTA TCAGTGATTA AAGACGTTGC AGGCCAGAGC ACTGTGACGT GTAAGTTACT GACGCCTGCT ATGGCTGCCG CTATTACCGA TGATGCCTCT CGAGAAAGAG CTGTTTCGGA ATTATTTGGC AACGCCTCCA CTGACATTGC CGCCTTAGCC GAAGAAGCCC CAGTGATTAA CCTTGTCAAT AGTATCGTTG AGCGGGCAGT GCAGGCAGAA TCGTCAGACA TTCATATTGA GGCAAGTTCA AAAAATATGC TTGTGCGCTT TCGGGTTGAT GGACGTATGG TGGAATTTAT GCAACAACCC ATGGCGCGAT TTCCAGCCAT TGCATCACGG ATTAAGCTTT TAGCACAATT AGACATTGCC GAGCGACGTT TACCGCAGGA TGGCCGCTTT ACAGTGCGTG CCAGCAACAA AGAGTTTGAT GTGAGGGTGT CCACCGCACC AGATGTACAT GGCGAGTCTA TTGTAATGCG TTTATTGCCT AAGAAACGCG ATGAACTGTC TCTCGACATC TTAGGATTTG AATCTGACCA CTTGGCGTTG ATACGTGAGT GGGGTGAGCT TAACAACGGT ATTGTTTTAG TGACCGGACC AACAGGCTCG GGTAAATCTA CCACCTTGTA TGGGTTGCTA TCAGACATTA AAACAGGCGC CGAGAAAATT GTCACCGTTG AGGACCCGGT AGAATATCAA CTTGATGGCA TCACGCAGGT ACAAGCAAGG CCAGACATTG GCTATACATT TGCTCGAGCG TTGCGGACGT TTTTACGTCA AGATCCTGAT GTGATCATGG TAGGGGAAAT TCGTGATAAA GAAACCGCCG ATATCGCGGT GCAATCTTCA CTGACTGGCC ATTTGGTGTT GTCTACTTTG CATACCAATG ATGCTTGTTC AGTATTTCCA CGCTTGACGG ACATTGGCGT TGAGCCTTTC ATGGTGGCGG CCACTATACA AGGAGTACAA GCCCAGCGCC TAGTGCGTAA ACTGTGCTCC CATTGCAGCG AGCCCACCGA AGCGCCTACC TTTCTCGATG AAAAATTAAA CCAGGGCGAC TGGCGCAAAC CCGTTGGTTG TAAGCTGTGT CAAGGGCGCG GCTATCGTGG TCGAATGGGG GTATACGAGT TGGTGCCTGT GAGCTCAGCC ATGCGCGATT TAATTACTCA CAGTGCACCA TTATCTGAAA TACGGGCATT AGCGCGACGT TCAGGTAGTC GCTCCTTGTT GGATGATGGT TTATTAAAAG CGTCTCGCGG GGTGACCAGC GTTGAAGAAG TGTTGCGCGT GTGCAGTGTG GAAGAGAGCG AGTTGTGA
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Protein sequence | MQYLAQSVPL SEADVRLAHS TAKELNCSLA SATSRLGLCG EDTVFSAISE IIQWPLVSQV SECPHAEQVL AASVSLGLSI DWCLDHSIFP VVNESIIDVY TDDPVAQFPL SVIKDVAGQS TVTCKLLTPA MAAAITDDAS RERAVSELFG NASTDIAALA EEAPVINLVN SIVERAVQAE SSDIHIEASS KNMLVRFRVD GRMVEFMQQP MARFPAIASR IKLLAQLDIA ERRLPQDGRF TVRASNKEFD VRVSTAPDVH GESIVMRLLP KKRDELSLDI LGFESDHLAL IREWGELNNG IVLVTGPTGS GKSTTLYGLL SDIKTGAEKI VTVEDPVEYQ LDGITQVQAR PDIGYTFARA LRTFLRQDPD VIMVGEIRDK ETADIAVQSS LTGHLVLSTL HTNDACSVFP RLTDIGVEPF MVAATIQGVQ AQRLVRKLCS HCSEPTEAPT FLDEKLNQGD WRKPVGCKLC QGRGYRGRMG VYELVPVSSA MRDLITHSAP LSEIRALARR SGSRSLLDDG LLKASRGVTS VEEVLRVCSV EESEL
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