Gene Patl_3232 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3232 
Symbol 
ID4175009 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp3880236 
End bp3881873 
Gene Length1638 bp 
Protein Length545 aa 
Translation table11 
GC content48% 
IMG OID638056263 
Producttype II secretion system protein E 
Protein accessionYP_662792 
Protein GI109899537 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.17007 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGTATC TTGCCCAATC GGTGCCATTA AGCGAAGCCG ATGTGCGTTT AGCACATTCT 
ACGGCAAAAG AGTTAAATTG CTCTTTAGCA TCAGCCACAT CTAGACTTGG CTTGTGTGGT
GAAGACACCG TTTTCAGTGC AATAAGCGAG ATTATTCAGT GGCCATTAGT CAGTCAAGTT
TCTGAATGCC CACACGCAGA ACAAGTGCTT GCTGCAAGTG TTAGCTTAGG GTTGAGTATT
GACTGGTGTT TAGACCATTC AATATTTCCA GTAGTGAACG AGTCGATAAT AGATGTCTAT
ACTGATGATC CCGTGGCCCA ATTCCCATTA TCAGTGATTA AAGACGTTGC AGGCCAGAGC
ACTGTGACGT GTAAGTTACT GACGCCTGCT ATGGCTGCCG CTATTACCGA TGATGCCTCT
CGAGAAAGAG CTGTTTCGGA ATTATTTGGC AACGCCTCCA CTGACATTGC CGCCTTAGCC
GAAGAAGCCC CAGTGATTAA CCTTGTCAAT AGTATCGTTG AGCGGGCAGT GCAGGCAGAA
TCGTCAGACA TTCATATTGA GGCAAGTTCA AAAAATATGC TTGTGCGCTT TCGGGTTGAT
GGACGTATGG TGGAATTTAT GCAACAACCC ATGGCGCGAT TTCCAGCCAT TGCATCACGG
ATTAAGCTTT TAGCACAATT AGACATTGCC GAGCGACGTT TACCGCAGGA TGGCCGCTTT
ACAGTGCGTG CCAGCAACAA AGAGTTTGAT GTGAGGGTGT CCACCGCACC AGATGTACAT
GGCGAGTCTA TTGTAATGCG TTTATTGCCT AAGAAACGCG ATGAACTGTC TCTCGACATC
TTAGGATTTG AATCTGACCA CTTGGCGTTG ATACGTGAGT GGGGTGAGCT TAACAACGGT
ATTGTTTTAG TGACCGGACC AACAGGCTCG GGTAAATCTA CCACCTTGTA TGGGTTGCTA
TCAGACATTA AAACAGGCGC CGAGAAAATT GTCACCGTTG AGGACCCGGT AGAATATCAA
CTTGATGGCA TCACGCAGGT ACAAGCAAGG CCAGACATTG GCTATACATT TGCTCGAGCG
TTGCGGACGT TTTTACGTCA AGATCCTGAT GTGATCATGG TAGGGGAAAT TCGTGATAAA
GAAACCGCCG ATATCGCGGT GCAATCTTCA CTGACTGGCC ATTTGGTGTT GTCTACTTTG
CATACCAATG ATGCTTGTTC AGTATTTCCA CGCTTGACGG ACATTGGCGT TGAGCCTTTC
ATGGTGGCGG CCACTATACA AGGAGTACAA GCCCAGCGCC TAGTGCGTAA ACTGTGCTCC
CATTGCAGCG AGCCCACCGA AGCGCCTACC TTTCTCGATG AAAAATTAAA CCAGGGCGAC
TGGCGCAAAC CCGTTGGTTG TAAGCTGTGT CAAGGGCGCG GCTATCGTGG TCGAATGGGG
GTATACGAGT TGGTGCCTGT GAGCTCAGCC ATGCGCGATT TAATTACTCA CAGTGCACCA
TTATCTGAAA TACGGGCATT AGCGCGACGT TCAGGTAGTC GCTCCTTGTT GGATGATGGT
TTATTAAAAG CGTCTCGCGG GGTGACCAGC GTTGAAGAAG TGTTGCGCGT GTGCAGTGTG
GAAGAGAGCG AGTTGTGA
 
Protein sequence
MQYLAQSVPL SEADVRLAHS TAKELNCSLA SATSRLGLCG EDTVFSAISE IIQWPLVSQV 
SECPHAEQVL AASVSLGLSI DWCLDHSIFP VVNESIIDVY TDDPVAQFPL SVIKDVAGQS
TVTCKLLTPA MAAAITDDAS RERAVSELFG NASTDIAALA EEAPVINLVN SIVERAVQAE
SSDIHIEASS KNMLVRFRVD GRMVEFMQQP MARFPAIASR IKLLAQLDIA ERRLPQDGRF
TVRASNKEFD VRVSTAPDVH GESIVMRLLP KKRDELSLDI LGFESDHLAL IREWGELNNG
IVLVTGPTGS GKSTTLYGLL SDIKTGAEKI VTVEDPVEYQ LDGITQVQAR PDIGYTFARA
LRTFLRQDPD VIMVGEIRDK ETADIAVQSS LTGHLVLSTL HTNDACSVFP RLTDIGVEPF
MVAATIQGVQ AQRLVRKLCS HCSEPTEAPT FLDEKLNQGD WRKPVGCKLC QGRGYRGRMG
VYELVPVSSA MRDLITHSAP LSEIRALARR SGSRSLLDDG LLKASRGVTS VEEVLRVCSV
EESEL