Gene Patl_3198 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3198 
Symbol 
ID4174975 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp3840613 
End bp3840921 
Gene Length309 bp 
Protein Length102 aa 
Translation table11 
GC content42% 
IMG OID638056229 
Producthelix-hairpin-helix repeat-containing competence protein ComEA 
Protein accessionYP_662758 
Protein GI109899503 
COG category[L] Replication, recombination and repair 
COG ID[COG1555] DNA uptake protein and related DNA-binding proteins 
TIGRFAM ID[TIGR00426] competence protein ComEA helix-hairpin-helix repeat region
[TIGR01259] comEA protein 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAAGT TTATCGCTAC CCTATTTTTT GCAGGTGTTT TATTGTCTGG TTATGTTGGC 
AACGTTGTTG CTGAGGCCAA AGTAGACAAA AGCAGTGTCA CACAGAAGAA GTCGCAGAAG
ATCAATTTGA ATACGGCAAC AGCCGAGCAG TTAGTCACAT TGCCAGGTAT TGGTAAGAAA
AAAGCAGCGG CGATCATCGC CTATCGAGAC AAAAGTGGTA AGTTCGCTAA AATCAGCGAT
CTTACTAACG TCAAAGGTAT TGGTAAAAAA ATGGTGGCTA AACTCGCTGC TCACGTACAG
GTCAACTAA
 
Protein sequence
MKKFIATLFF AGVLLSGYVG NVVAEAKVDK SSVTQKKSQK INLNTATAEQ LVTLPGIGKK 
KAAAIIAYRD KSGKFAKISD LTNVKGIGKK MVAKLAAHVQ VN