| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3135 |
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| Symbol | clpX |
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| ID | 4174908 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3778354 |
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| End bp | 3779631 |
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| Gene Length | 1278 bp |
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| Protein Length | 425 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638056162 |
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| Product | ATP-dependent protease ATP-binding subunit ClpX |
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| Protein accession | YP_662695 |
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| Protein GI | 109899440 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1219] ATP-dependent protease Clp, ATPase subunit |
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| TIGRFAM ID | [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000469456 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGATA AGCAAAGCGG AGATGGCGAT AACAAGCTAC TTTATTGTTC TTTTTGTGGG
AAAAGCCAGC ATGAAGTGAG AAAGCTCATC GCTGGCCCGT CAGTTTTTGT ATGCGATGAA
TGCGTTGAAT TATGTAATGA CATTATTCGC GAAGAGATCA AAGAAATCGC TCCGAAGCAA
AAGCAAGACG AGCTTCCTAC ACCGAAAGAG ATCCACAGTC ATCTGGATGA TTATGTCATC
GGTCAAGAAC ACGCCAAGAA GGTGCTTTCC GTCGCAGTGT ATAACCACTA TAAACGATTA
CGTAATGGTG ACGTGCATGA CGGTGTTGAA CTAGGTAAAA GTAATATTTT GCTAATGGGC
CCAACTGGTA GTGGTAAAAC CTTGCTCGCT GAAACACTAG CTCGTTTATT AGATGTTCCA
TTTACGATGG CCGATGCGAC TACTCTGACC GAAGCGGGTT ATGTTGGTGA AGATGTAGAG
AATATCATTC AGAAGTTATT GCAAAAATGC GACTACGATG TTGAAAAGGC GCAGCGCGGA
ATCGTTTATA TCGATGAAAT CGACAAGATC TCTCGTAAGT CAGATAACCC ATCGATTACA
CGGGATGTAT CCGGTGAGGG CGTGCAGCAG GCTTTGCTTA AGCTGATTGA AGGCACCATT
GCGTCTGTTC CGCCGCAAGG TGGACGTAAA CATCCTCAAC AAGAGTTTTT GCAAGTCGAT
ACCTCTAAAA TTCTGTTTAT CTGTGGTGGG GCATTTGCGG GGCTTGATAA AGTCATCGAA
CAACGCGCGC ATACAGGCAC CGGTATTGGT TTTGGTACAG CAATTAAAGA CAGCAGCAAC
AAGTCGAAAG AAGGCGAGTT GTTGAAAAAA GTTGAGCCGG AGGATTTGGT CAAATACGGT
CTAATTCCTG AGTTTATCGG GCGTTTGCCT GTTCTGACCA GTCTTGAAGA GTTGAGTGAA
GAAGCACTTA TTCAAATTTT GCGTGAGCCG AAAAACTCTC TTACGAAACA ATATGCGGCT
TTATTCTCTT TAGAAGATAC TGAGTTAGAG TTTAGAGAAG ATGCTTTGCA AGCGATAGCT
AAGAAAGCGA TGTCACGTAA AACAGGTGCT CGTGGTCTGC GTTCAATTGT TGAGGCAGTG
TTACTCGACA CGATGTACGA GTTACCTTCT ATGTCGAACG TAAGCAAAGT GGTAGTCGAT
GAAACTGTCA TTCGTGGGGA ATCAAAACCG ATTCTAATTT ACGATAGTGC AGCGGATAAA
AAATCCATTT CGGAATAA
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| Protein sequence | MSDKQSGDGD NKLLYCSFCG KSQHEVRKLI AGPSVFVCDE CVELCNDIIR EEIKEIAPKQ
KQDELPTPKE IHSHLDDYVI GQEHAKKVLS VAVYNHYKRL RNGDVHDGVE LGKSNILLMG
PTGSGKTLLA ETLARLLDVP FTMADATTLT EAGYVGEDVE NIIQKLLQKC DYDVEKAQRG
IVYIDEIDKI SRKSDNPSIT RDVSGEGVQQ ALLKLIEGTI ASVPPQGGRK HPQQEFLQVD
TSKILFICGG AFAGLDKVIE QRAHTGTGIG FGTAIKDSSN KSKEGELLKK VEPEDLVKYG
LIPEFIGRLP VLTSLEELSE EALIQILREP KNSLTKQYAA LFSLEDTELE FREDALQAIA
KKAMSRKTGA RGLRSIVEAV LLDTMYELPS MSNVSKVVVD ETVIRGESKP ILIYDSAADK
KSISE
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