| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3109 |
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| Symbol | |
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| ID | 4174882 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3742197 |
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| End bp | 3744413 |
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| Gene Length | 2217 bp |
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| Protein Length | 738 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638056136 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_662669 |
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| Protein GI | 109899414 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4772] Outer membrane receptor for Fe3+-dicitrate |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0242785 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGAA CGCTACTCGC TACCGCTGTC GCAACCACAA TGTTTACCTC AGTTGCACAA
GAAACACAGA ACAATAATGC AATTGACACC GTTACTATTT ACGGCAATCA ACTTAAGGTC
CAGGAAGCCA CAGGTGCGGC TCAGTACATT GGTGAGCAAG ACTTAGAGAA GTTCGCCTAC
ACAGATATTC AACGCATTAT TAGGCAAGCG CCGGGTGTGT CTTTGCAAGT AGAAGACGGT
TACGGCTTAC GCCCAAACAT CAGTATCCGC GGTGTAGCGA CTGAGCGAAG TGGTCGTATT
ACGTTATTAG AAGACAACGT TTTGATTGCT CCTGCACCCT ACTCAGCCCC TTCAGCGTAT
TACTTCCCTA CTGCTGGGAG AATGAGCGCT TTTGAAGTTG TTAAAGGCCC TGCGGCGATT
ACCCAAGGGC CCTATACTAT AGGCGGGGCA ATCAATATGA TTTCAACACC TATCCCTAGC
ACTCAAAGCG GACAAGTCAC ATTGGAGGCA GGTCAAGATG CGACCTATCG TGCCCATGCC
ACAATAGGCG GTCAGAATGA CAGTGGCTTC GGTTATTTAC TTGAAGCGCA CCAATGGCAA
TCTGATGGTT TTCAAGATAT TGACCGCAGC AGCAACGACA CAGGTTTAGA TGTGACCGAT
GTCACCATGA AACTTGCCTA TTCACCAAGA GATTCACGCC ATAGTGTAGA GCTTAAACTG
CAATACACAG ATCAAGATTC AGAGCAAAGC TACTTAGGTT TGACGGATGC TGATTTTGCC
AACAATGCAC AGCGTCGCTA CGGCTTATCG GCCCTAGACA ACATCAGCAC AGAACATACA
CAAGTGATGT TGAATTATGC GTTTGAAATC AATAAACACT TACACTTCAC GGCAGTTGCC
TACAATAATA CCCACGAACG TGATTGGTTT AAAACCGAAG GCATTGACTT AGACGGTAGC
GAAAACGCTC AAGACTTCTC GCGTACCAGT TGGTCAGATG TCGTCAACGC TATCAATAAC
AATGAATCAA TTGGTGATAC CAGTGTCGCT ATGCTTCAAG GTATTTTAGA TGGCAGCATA
GACACCGAAG TCGGGAGTAT TCAATTGCGC TCTAACAGCC GAGAGTATTT TTCACGTGGT
ATCCAGTTTG GTTTGAACTG GAATAAGCAA TTTGGTGAAG CCAAGCACCA TATTGAGATG
GGTCTGCGCC TGCACGAAGA TGAAGAGGAC CGCCTACAGC GTAACAGTAC GTATCAGCAA
GTAGACGGCC AATTGTTATT AAGTGATTTA GGTGAGCTTG GCAACGCGGG CAATCGAGTA
CAGGATGCAG ATGCATTAGC GCTGCACGTT TACGATCGGA TTGAGCTCGG TGATTGGATT
TTCACGCCAG GTCTACGCTT CGAAGATATC AGCCAAAGCC GCACTCGTTA CACGAATGGC
GCTGAACGAG TATTTCGTGA CGACAGAGAA AATGACACCA CAGTCTTATT ACCTGGCTTA
GGCGTGCTGT ACAAAGTAGA TGGCAACTTA AACTTGATTG CCGGTGCTCA TAAAGGATTC
ACTGCACCAA GTAACTCCCC AGGTGCGAAA GAAGAAGAAG CGGTTAACTA CGAATTAGGC
TTTCGTTACA ACAATAACGC TTTGAACGCA GAGCTAGTCT ACTTTTTAAG TGACTACGAC
AACATCGTAG GTGTGTGTAC TGCATCTTCT GGCAGTAATT GTGAAATAGG TGACGCGTTC
AATGGGGATG CAGCTACCGT ACAAGGCATT GAATTCTTAC TGAAAACTGA ATTAGGCCAA
TTCAACGGCG TGCGCATTCC ATTCAATATA ACCTACAGCT ACATCGACAG TGAATTTGAT
ACGGACATTT CAGGCACTGA CTTTTTTGGT GACGTTAGTG CGGGCGACAG TATTCCTTAT
ATTCCAGAAA ACCAAGGGCA AATAACCATA GGGTTAGAAG GCGATAAATG GACGACTTAC
CTAAATGCCG TGTATGTAGA CGGTGTTTGT ACTCGTGCTT CGTGTGGCGG TTTCGAGGTG
ACAGACAGTT CATTCATTCT TGACCTATCT GGCTCGTACA ACGTAAGTAA CGACTTACGT
GTTTTCGCTC GTATCGAAAA CCTAACCGAC CAAGAAGACA TTGTCAGCCG TCAACCTTAC
GGTGCTCGCC CTAACAAATC GCGTACGGCT TCTGTAGGCG TTACTTACAG CTTTTAA
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| Protein sequence | MKRTLLATAV ATTMFTSVAQ ETQNNNAIDT VTIYGNQLKV QEATGAAQYI GEQDLEKFAY
TDIQRIIRQA PGVSLQVEDG YGLRPNISIR GVATERSGRI TLLEDNVLIA PAPYSAPSAY
YFPTAGRMSA FEVVKGPAAI TQGPYTIGGA INMISTPIPS TQSGQVTLEA GQDATYRAHA
TIGGQNDSGF GYLLEAHQWQ SDGFQDIDRS SNDTGLDVTD VTMKLAYSPR DSRHSVELKL
QYTDQDSEQS YLGLTDADFA NNAQRRYGLS ALDNISTEHT QVMLNYAFEI NKHLHFTAVA
YNNTHERDWF KTEGIDLDGS ENAQDFSRTS WSDVVNAINN NESIGDTSVA MLQGILDGSI
DTEVGSIQLR SNSREYFSRG IQFGLNWNKQ FGEAKHHIEM GLRLHEDEED RLQRNSTYQQ
VDGQLLLSDL GELGNAGNRV QDADALALHV YDRIELGDWI FTPGLRFEDI SQSRTRYTNG
AERVFRDDRE NDTTVLLPGL GVLYKVDGNL NLIAGAHKGF TAPSNSPGAK EEEAVNYELG
FRYNNNALNA ELVYFLSDYD NIVGVCTASS GSNCEIGDAF NGDAATVQGI EFLLKTELGQ
FNGVRIPFNI TYSYIDSEFD TDISGTDFFG DVSAGDSIPY IPENQGQITI GLEGDKWTTY
LNAVYVDGVC TRASCGGFEV TDSSFILDLS GSYNVSNDLR VFARIENLTD QEDIVSRQPY
GARPNKSRTA SVGVTYSF
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