| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3063 |
|---|
| Symbol | |
|---|
| ID | 4174835 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3696925 |
|---|
| End bp | 3697692 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 638056089 |
|---|
| Product | glucose-1-phosphate cytidylyltransferase |
|---|
| Protein accession | YP_662623 |
|---|
| Protein GI | 109899368 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1208] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) |
|---|
| TIGRFAM ID | [TIGR02623] glucose-1-phosphate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCGG TTATTCTAGC AGGCGGGTTA GGCACTCGAA TAAGTGAAGA GTCACATTTA
AAACCCAAAC CTATGATTGA AATTGGTGGT ATGCCTATTC TTTGGCATAT CATGAAAATT
TATTCGTTTT ACGGGATCAA TGATTTTGTC ATCTGCCTTG GTTACAAGGG ATATATCATT
AAAGAGTATT TCGCTAATTA CTTTTTACAT ATGTCTGACG TCACTTTTGA CATGCGTACA
AATGCTATGC AAGTGCATCA AGAACACTCA GAGCCTTGGC GAGTAACCTT AGTTAATACC
GGCGAATTTA GTATGACCGG CGGTCGTTTG AAACGCATCC AAGATTATAT TGGTGATGAA
ACCTTTTGTT TTACTTATGG CGATGGTGTC GCTGATATTA ATATTAAGGC TTTGATAGCT
CATCATAAAG GCCAAGCAAA AATTGCCACA GTTACAGCTA TTAAACCTCC AGGGCGTTAC
GGTGCGTTAA ATATCCAACA AAATATTGTT AAAAATTTCC AAGAAAAACC AGCGGGTGAT
GGTTCATCCA TTAACGGTGG TTTTTTTGTA TTAGAGCCCA CTATATTTGA TTATTTGGCA
GATGATAAGA CCAGCTTTGA AGGCGAACCG TTAGTTAGTT TGGCCGAACA AGGGCAATTG
ACGGCATATC AACATCATGG TTTTTGGCAG GCCATGGATA CTTTACGGGA TAAAAATCAC
CTGGATGCCT TATGGCAATC TAAAACTGCG CCTTGGAAAC TGTGGTAA
|
|---|
| Protein sequence | MKAVILAGGL GTRISEESHL KPKPMIEIGG MPILWHIMKI YSFYGINDFV ICLGYKGYII
KEYFANYFLH MSDVTFDMRT NAMQVHQEHS EPWRVTLVNT GEFSMTGGRL KRIQDYIGDE
TFCFTYGDGV ADINIKALIA HHKGQAKIAT VTAIKPPGRY GALNIQQNIV KNFQEKPAGD
GSSINGGFFV LEPTIFDYLA DDKTSFEGEP LVSLAEQGQL TAYQHHGFWQ AMDTLRDKNH
LDALWQSKTA PWKLW
|
|---|
| |