| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3042 |
|---|
| Symbol | |
|---|
| ID | 4174814 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3671242 |
|---|
| End bp | 3673413 |
|---|
| Gene Length | 2172 bp |
|---|
| Protein Length | 723 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638056068 |
|---|
| Product | flagellar hook-length control protein |
|---|
| Protein accession | YP_662602 |
|---|
| Protein GI | 109899347 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG3144] Flagellar hook-length control protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.835952 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCAAC ATATTGCCAC CGCAAAATCA GACGTTGCCG CTTATGCGGT TGATGTGAGT
GACGAAAGCC TATCCAAGCT GCAAAACGCG GATGAATTTG CCTATATGCT GGCCAAGGAA
AATAAGACTC AGCATTCGCC CAAAGAAACT ACGCAACCGA AACTAAGCTC AGAGCCAAAA
ACCACGGCGA AAGATAAGCT GGCACCGGAA AAACAACTGG GCACTAAAGA AGAGTACTCT
CACAAGAACC CTCCCGACAG TGCCAACACT GGCAAAGTGA GTGACAATAA AGAGACAAGA
AAATCTGACT CGCCAGTCGA TACCGCACCT GATGAAACTG GGTTAACGGC AGATGATAAG
CAGCAAATTG ATACCTCAAA GGGCAATACT GAAAGTTCAC GAATCACGAC GGGTAGCAAA
AATGAAGCAG ATGCTAATCA CTGGCTTTCG ATTATTGAAC AACTAGCACT TAATAGTGAA
GACGCTATTA GCAGCAAGGG GCAACACAGC GCTCTTGCCA GTGCAAGCGG GACTGACGTT
CCTGTCAACA CGTTAAATGA TAATAAACTG GCTGATAGCG TGAACGGCGA CGAGGAAGCA
TTGCTTCTGG CTTTGTTAAA TCACATTTTC GGAGAAAAGA CTCAGGCGAA TGCAGATAAG
GCATTAGTAC CTGAGCACGA AGCGGCTGAT GAAGGAACGG AGCTCACCAC TGATGATGAC
GTCGGTAAAA TGATGGCGCT ACTTCAGAAT AACCCAGAAT TGCTTAAAGA ATTAGAATCA
CTGATTGTGG GTCAACAACA AGTAGATGGC AGCTCACGTT TAAACGATTT AAGCACCTTC
GACGCTAAAG GCGAAGACGC GCTAGATAGT GACTCACTGG AAAATGAACT TGCTGCGCTG
GATTTGGCAC AAAAGCAATT ATTCCAGCAA GATAAAGTCA TAAGCGATGA AACGCTAGCA
GGTATTGCAG AAGCTGTGGT TAGCTTGATG AGCGTTACAA CGCCAGCTAA GGGGGATGCC
CTGAATAGCG CTCCAGAGAC TGCGAACGCT GTGGCTGTCA GCACAGCTGA TTTGCTTGAA
GGCTCAGCAT TAAGCGAGCA AAGTACTGGT CAAACCGAAC CCTTGGCCTT AGAAAATGAC
TTAACCCAGC AACAACTAGC AATGTTAGAC AGTGCGCCTG AATTGAAAAA GCTATTACAG
TTACCACCCG AGAAGCTTGA AAGTGCATTA GCGCTACTTG CCAAAGAATT ACAAAAGGGA
GGAACCGCTA GCACTGCAGG GGACGCGACA AGTAATGCCA TGTTAAAAGG GGCGCTGCAA
ACAGACGCCG AATTAAGCTC AACTGCTAAC GTAAATTTGA ACACCCTTAT TAATAAAGTT
GACGCTGATA GCAACCCCAG CGGCACGGCT GACTTTGTCG CTGCCCTTAA AACCGGTTTA
GCTGAAGTAA AAGCGCAGCT CGAAAAAGGG CGAGAGCCTG GCATTGATTT AAAAGCCTTG
GTGAATGACG CCATAAAAGC GTCACCAGAG TTGGCAAGCA ATATGCTTCC TAATAAGCAA
GAACAGGTAG AATTGGCGAC GCGCTCTGTG TCTCAAATAT TGGACGTGGC GCAATTGATG
AGCACCGCAC TCGAGCAAGC CTCGCATCAG CAAACGGCAA ATGCGACTTA TCGAGAGCTA
GGCATTAACA TGGTCGAACA CAACAAAGCC AATCAATTGC AGCAAGGACA ATTCGACAAA
GCCTTGAATT TGGCCAAACC AGAGGCCCAT CAGCAATTGG CTGAAAAAGT ACGCTTCATG
GTGAATGCCA ATCAGTTGGT TGCCGATATT CGCCTCGACC CAGCTGAATT GGGCTCGATG
CATGTAAAAG TGTCAGTCAA CGGTGAATCA GCGAACGTGA GCTTTGTGGT GCAATCGATA
CATGCGAAAG AGGCGATTGA TAACGCCGCG CCGAGATTAA AAGAGATGCT GGCAGAAAAA
GGCATTGAGT TAGGTCAATC ATCGGTTGAA CAAGAATCCC AAGAACAAGA ACAGCAAACG
GCCGGTGGCG GCTCAGGTGA TGCACCGGGA CGCAGTTCAG AGCAGGGGAG TGCCGATGGT
GAGGTGCCTG ACGGGATATT ACAACAACCT ATTGTCAATG GCTCTTTAGG GGGTATTGAT
TACTTTGTTT GA
|
|---|
| Protein sequence | MLQHIATAKS DVAAYAVDVS DESLSKLQNA DEFAYMLAKE NKTQHSPKET TQPKLSSEPK
TTAKDKLAPE KQLGTKEEYS HKNPPDSANT GKVSDNKETR KSDSPVDTAP DETGLTADDK
QQIDTSKGNT ESSRITTGSK NEADANHWLS IIEQLALNSE DAISSKGQHS ALASASGTDV
PVNTLNDNKL ADSVNGDEEA LLLALLNHIF GEKTQANADK ALVPEHEAAD EGTELTTDDD
VGKMMALLQN NPELLKELES LIVGQQQVDG SSRLNDLSTF DAKGEDALDS DSLENELAAL
DLAQKQLFQQ DKVISDETLA GIAEAVVSLM SVTTPAKGDA LNSAPETANA VAVSTADLLE
GSALSEQSTG QTEPLALEND LTQQQLAMLD SAPELKKLLQ LPPEKLESAL ALLAKELQKG
GTASTAGDAT SNAMLKGALQ TDAELSSTAN VNLNTLINKV DADSNPSGTA DFVAALKTGL
AEVKAQLEKG REPGIDLKAL VNDAIKASPE LASNMLPNKQ EQVELATRSV SQILDVAQLM
STALEQASHQ QTANATYREL GINMVEHNKA NQLQQGQFDK ALNLAKPEAH QQLAEKVRFM
VNANQLVADI RLDPAELGSM HVKVSVNGES ANVSFVVQSI HAKEAIDNAA PRLKEMLAEK
GIELGQSSVE QESQEQEQQT AGGGSGDAPG RSSEQGSADG EVPDGILQQP IVNGSLGGID
YFV
|
|---|
| |